Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000204A_C01 KMC000204A_c01
(814 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00006634.1| hypothetical protein [Rhodobacter sphaeroides] 33 5.0
ref|NP_504401.1| Carboxylesterase family member, possibly N-myri... 33 6.5
pir||H89045 protein B0238.13 [imported] - Caenorhabditis elegans 33 6.5
>gb|ZP_00006634.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 254
Score = 33.1 bits (74), Expect = 5.0
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 214 PS*ERGSKLFYNSYYEMNLPQFNWQLNKLTIHGLISKWRLYNPIPPKYIVH*KIYQ 381
PS RGS+LF NLPQF + +T+ G +S+W L P K + +I +
Sbjct: 110 PSTGRGSELFAFWRDFSNLPQFMESVEHVTVVGDVSRWTLAAPFGRKITLETRIVE 165
>ref|NP_504401.1| Carboxylesterase family member, possibly N-myristoylated
[Caenorhabditis elegans] gi|15963710|gb|AAB65992.3|
Hypothetical protein B0238.13 [Caenorhabditis elegans]
Length = 811
Score = 32.7 bits (73), Expect = 6.5
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +2
Query: 602 LTCSKFQAPALGLDLGFLPSNDENPFPSPTGACS*TGTDGPLLASVGSLEGMPFSSFFAL 781
L F+ PA G+ F+P+ D + FP P + S+G EG+ F F+A
Sbjct: 611 LKAEGFKCPASGM-FSFVPNFDGDFFPKPFDELRKEAPKLGAIVSIGEYEGLGFEDFYAG 669
Query: 782 STXPFSATAAS 814
P +A+
Sbjct: 670 QKTPQQMLSAA 680
>pir||H89045 protein B0238.13 [imported] - Caenorhabditis elegans
Length = 435
Score = 32.7 bits (73), Expect = 6.5
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +2
Query: 602 LTCSKFQAPALGLDLGFLPSNDENPFPSPTGACS*TGTDGPLLASVGSLEGMPFSSFFAL 781
L F+ PA G+ F+P+ D + FP P + S+G EG+ F F+A
Sbjct: 171 LKAEGFKCPASGM-FSFVPNFDGDFFPKPFDELRKEAPKLGAIVSIGEYEGLGFEDFYAG 229
Query: 782 STXPFSATAAS 814
P +A+
Sbjct: 230 QKTPQQMLSAA 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 720,731,009
Number of Sequences: 1393205
Number of extensions: 16736645
Number of successful extensions: 46646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 44553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46619
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41736604858
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
