Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000198A_C01 KMC000198A_c01
(983 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568941.1| putative protein; protein id: At5g61840.1, supp... 251 5e-77
gb|AAM64940.1| unknown [Arabidopsis thaliana] 251 5e-77
dbj|BAB10084.1| gb|AAC80624.1~gene_id:MAC9.17~strong similarity ... 251 5e-77
ref|NP_174064.1| unknown protein; protein id: At1g27440.1 [Arabi... 248 3e-76
dbj|BAC20928.1| pectin-glucuronyltransferase [Nicotiana plumbagi... 242 2e-74
>ref|NP_568941.1| putative protein; protein id: At5g61840.1, supported by cDNA:
34861., supported by cDNA: gi_15809825, supported by
cDNA: gi_17978868 [Arabidopsis thaliana]
gi|15809826|gb|AAL06841.1| AT5g61840/mac9_140
[Arabidopsis thaliana] gi|17978869|gb|AAL47406.1|
AT5g61840/mac9_140 [Arabidopsis thaliana]
Length = 415
Score = 251 bits (640), Expect(3) = 5e-77
Identities = 117/129 (90%), Positives = 125/129 (96%)
Frame = -1
Query: 617 YAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPE 438
+APWSPRLVEAV+FGCIPVIIADDIVLPFADAIPWE+IGVFVDEKDVP LDTILTSIPPE
Sbjct: 287 WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTILTSIPPE 346
Query: 437 VILRKQRLLANPSMKQAMLFPQPAQPGDTFHQVLNGLARKLPHDRSIFLKSGEKVLNWTA 258
VILRKQRLLANPSMKQAMLFPQPAQPGD FHQVLNGLARKLPH+RS++L+ GEK+LNWTA
Sbjct: 347 VILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGEKLLNWTA 406
Query: 257 GPVGDLKPW 231
GPV DLKPW
Sbjct: 407 GPVADLKPW 415
Score = 46.6 bits (109), Expect(3) = 5e-77
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -3
Query: 681 FDICIEHPTTYHKDMQQAVFCLCSL 607
FDI EHPTTY++DMQ+A+FCLC L
Sbjct: 261 FDISTEHPTTYYEDMQRAIFCLCPL 285
Score = 35.0 bits (79), Expect(3) = 5e-77
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -2
Query: 730 RGARAAAWENFKNNPL 683
RGARAA WENFK+NPL
Sbjct: 245 RGARAAVWENFKDNPL 260
>gb|AAM64940.1| unknown [Arabidopsis thaliana]
Length = 415
Score = 251 bits (640), Expect(3) = 5e-77
Identities = 117/129 (90%), Positives = 125/129 (96%)
Frame = -1
Query: 617 YAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPE 438
+APWSPRLVEAV+FGCIPVIIADDIVLPFADAIPWE+IGVFVDEKDVP LDTILTSIPPE
Sbjct: 287 WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTILTSIPPE 346
Query: 437 VILRKQRLLANPSMKQAMLFPQPAQPGDTFHQVLNGLARKLPHDRSIFLKSGEKVLNWTA 258
VILRKQRLLANPSMKQAMLFPQPAQPGD FHQVLNGLARKLPH+RS++L+ GEK+LNWTA
Sbjct: 347 VILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGEKLLNWTA 406
Query: 257 GPVGDLKPW 231
GPV DLKPW
Sbjct: 407 GPVADLKPW 415
Score = 46.6 bits (109), Expect(3) = 5e-77
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -3
Query: 681 FDICIEHPTTYHKDMQQAVFCLCSL 607
FDI EHPTTY++DMQ+A+FCLC L
Sbjct: 261 FDISTEHPTTYYEDMQRAIFCLCPL 285
Score = 35.0 bits (79), Expect(3) = 5e-77
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -2
Query: 730 RGARAAAWENFKNNPL 683
RGARAA WENFK+NPL
Sbjct: 245 RGARAAVWENFKDNPL 260
>dbj|BAB10084.1| gb|AAC80624.1~gene_id:MAC9.17~strong similarity to unknown protein
[Arabidopsis thaliana] gi|23821294|dbj|BAC20929.1|
NpGUT1 homolog [Arabidopsis thaliana]
Length = 341
Score = 251 bits (640), Expect(3) = 5e-77
Identities = 117/129 (90%), Positives = 125/129 (96%)
Frame = -1
Query: 617 YAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPE 438
+APWSPRLVEAV+FGCIPVIIADDIVLPFADAIPWE+IGVFVDEKDVP LDTILTSIPPE
Sbjct: 213 WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTILTSIPPE 272
Query: 437 VILRKQRLLANPSMKQAMLFPQPAQPGDTFHQVLNGLARKLPHDRSIFLKSGEKVLNWTA 258
VILRKQRLLANPSMKQAMLFPQPAQPGD FHQVLNGLARKLPH+RS++L+ GEK+LNWTA
Sbjct: 273 VILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGEKLLNWTA 332
Query: 257 GPVGDLKPW 231
GPV DLKPW
Sbjct: 333 GPVADLKPW 341
Score = 46.6 bits (109), Expect(3) = 5e-77
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -3
Query: 681 FDICIEHPTTYHKDMQQAVFCLCSL 607
FDI EHPTTY++DMQ+A+FCLC L
Sbjct: 187 FDISTEHPTTYYEDMQRAIFCLCPL 211
Score = 35.0 bits (79), Expect(3) = 5e-77
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -2
Query: 730 RGARAAAWENFKNNPL 683
RGARAA WENFK+NPL
Sbjct: 171 RGARAAVWENFKDNPL 186
>ref|NP_174064.1| unknown protein; protein id: At1g27440.1 [Arabidopsis thaliana]
gi|9802541|gb|AAF99743.1|AC004557_22 F17L21.23
[Arabidopsis thaliana]
Length = 412
Score = 248 bits (632), Expect(3) = 3e-76
Identities = 117/129 (90%), Positives = 124/129 (95%)
Frame = -1
Query: 617 YAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPE 438
+APWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFV EKDVP+LDTILTSIP E
Sbjct: 284 WAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVAEKDVPELDTILTSIPTE 343
Query: 437 VILRKQRLLANPSMKQAMLFPQPAQPGDTFHQVLNGLARKLPHDRSIFLKSGEKVLNWTA 258
VILRKQRLLANPSMK+AMLFPQPAQPGD FHQ+LNGLARKLPHD+SI+LK+GEK LNWTA
Sbjct: 344 VILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDKSIYLKTGEKALNWTA 403
Query: 257 GPVGDLKPW 231
GPV DLKPW
Sbjct: 404 GPVADLKPW 412
Score = 45.4 bits (106), Expect(3) = 3e-76
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = -3
Query: 681 FDICIEHPTTYHKDMQQAVFCLCSL 607
FDI +HPTTY++DMQ+A+FCLC L
Sbjct: 258 FDISTDHPTTYYEDMQRAIFCLCPL 282
Score = 37.0 bits (84), Expect(3) = 3e-76
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = -2
Query: 730 RGARAAAWENFKNNPL 683
RGARAA WENFKNNPL
Sbjct: 242 RGARAAVWENFKNNPL 257
>dbj|BAC20928.1| pectin-glucuronyltransferase [Nicotiana plumbaginifolia]
Length = 341
Score = 242 bits (617), Expect(3) = 2e-74
Identities = 114/129 (88%), Positives = 120/129 (92%)
Frame = -1
Query: 617 YAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPE 438
+APWSPRLVEAV+FGCIPVIIADDIVLPFADAIPWE+IGVFV EKDVP LDTILTSIPPE
Sbjct: 213 WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVAEKDVPNLDTILTSIPPE 272
Query: 437 VILRKQRLLANPSMKQAMLFPQPAQPGDTFHQVLNGLARKLPHDRSIFLKSGEKVLNWTA 258
ILRKQRLLANPSMKQAMLFPQPAQ GD FHQ+LNGLARKLPHD+S +LK GE LNWTA
Sbjct: 273 EILRKQRLLANPSMKQAMLFPQPAQSGDAFHQILNGLARKLPHDKSTYLKPGENFLNWTA 332
Query: 257 GPVGDLKPW 231
GPVGDLKPW
Sbjct: 333 GPVGDLKPW 341
Score = 46.6 bits (109), Expect(3) = 2e-74
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -3
Query: 681 FDICIEHPTTYHKDMQQAVFCLCSL 607
FDI EHPTTY++DMQ+A+FCLC L
Sbjct: 187 FDISTEHPTTYYEDMQRAIFCLCPL 211
Score = 35.0 bits (79), Expect(3) = 2e-74
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -2
Query: 730 RGARAAAWENFKNNPL 683
RGARAA WENFK+NPL
Sbjct: 171 RGARAAVWENFKDNPL 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 880,668,574
Number of Sequences: 1393205
Number of extensions: 20004154
Number of successful extensions: 60469
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 57899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60449
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 56574306528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
