Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000197A_C01 KMC000197A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC41867.1| unknown protein [Arabidopsis thaliana] gi|290290... 53 3e-06
ref|NP_196899.1| unknown protein; protein id: At5g13950.1 [Arabi... 53 3e-06
gb|AAG38133.1| nucleocapsid protein [Whitewater Arroyo virus] 34 2.1
pir||T07623 extensin homolog HRGP2 - soybean (fragment) gi|34745... 33 2.7
gb|AAM48290.1| homeodomain protein Hfi22 [Nicotiana tabacum] 33 3.6
>dbj|BAC41867.1| unknown protein [Arabidopsis thaliana] gi|29029052|gb|AAO64905.1|
At5g13950 [Arabidopsis thaliana]
Length = 939
Score = 53.1 bits (126), Expect = 3e-06
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = -1
Query: 666 QFLAPGAYGML-DAGTPRINAVVPPSSHPLDYFSGRDTPSAVVPNDMTWVSLPPPPPDPA 490
Q +A G YGML G+ ++++ + ++PLDY SG + ++++P+D+ W++ +
Sbjct: 867 QMVASGNYGMLMGGGSTQVSSNLVQPANPLDYLSGSNPTTSLMPDDVVWMN--QSRQNSG 924
Query: 489 LNDQMGKPYLRSWN 448
L+D +GK Y RSWN
Sbjct: 925 LHDPLGKLYPRSWN 938
>ref|NP_196899.1| unknown protein; protein id: At5g13950.1 [Arabidopsis thaliana]
gi|10177661|dbj|BAB11123.1| gene_id:MAC12.8~unknown
protein [Arabidopsis thaliana]
Length = 978
Score = 53.1 bits (126), Expect = 3e-06
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = -1
Query: 666 QFLAPGAYGML-DAGTPRINAVVPPSSHPLDYFSGRDTPSAVVPNDMTWVSLPPPPPDPA 490
Q +A G YGML G+ ++++ + ++PLDY SG + ++++P+D+ W++ +
Sbjct: 906 QMVASGNYGMLMGGGSTQVSSNLVQPANPLDYLSGSNPTTSLMPDDVVWMN--QSRQNSG 963
Query: 489 LNDQMGKPYLRSWN 448
L+D +GK Y RSWN
Sbjct: 964 LHDPLGKLYPRSWN 977
>gb|AAG38133.1| nucleocapsid protein [Whitewater Arroyo virus]
Length = 172
Score = 33.9 bits (76), Expect = 2.1
Identities = 17/59 (28%), Positives = 27/59 (44%)
Frame = -1
Query: 669 DQFLAPGAYGMLDAGTPRINAVVPPSSHPLDYFSGRDTPSAVVPNDMTWVSLPPPPPDP 493
D A G + + G P + + P + + R T ++ PND TW+ + PP DP
Sbjct: 5 DTIPAKGPIPIRNGGAPSLTTLKPEIENQV-----RRTVESLSPNDTTWIDIEGPPNDP 58
>pir||T07623 extensin homolog HRGP2 - soybean (fragment)
gi|347455|gb|AAA33971.1| hydroxyproline-rich
glycoprotein
Length = 169
Score = 33.5 bits (75), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 597 PSSHPLDYFSGRDTPSAVVPNDMTWVSLPPPPPDP 493
P+SHP Y+ P++ P +VS PPP P P
Sbjct: 94 PTSHPPYYYKSPPPPTSYPPPPYHYVSPPPPSPSP 128
>gb|AAM48290.1| homeodomain protein Hfi22 [Nicotiana tabacum]
Length = 308
Score = 33.1 bits (74), Expect = 3.6
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 34 IINIKRRYYVKN---KNIAQKEEPAFSISYLSKLLKNTYPETREKNNNNEICNW 186
I+ +K + Y +N K +A KEE S S +K+++ + P + NNNN + N+
Sbjct: 108 ILELKSKVYTENGESKGVAVKEEAMESESDDNKVIEQSKPNDNDNNNNNFLENF 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,862,435
Number of Sequences: 1393205
Number of extensions: 14277996
Number of successful extensions: 56243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 43141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52928
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
