Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000196A_C01 KMC000196A_c01
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06969.1| putative pre-mRNA splicing factor ATP-dependent ... 161 6e-39
ref|NP_196805.1| pre-mRNA splicing factor ATP-dependent RNA heli... 161 8e-39
gb|AAG33228.2|AF305070_1 DEAH-box RNA helicase [Chlamydomonas re... 100 2e-20
ref|NP_727764.1| CG32604-PB [Drosophila melanogaster] gi|1072824... 94 2e-18
ref|NP_572947.1| CG32604-PA [Drosophila melanogaster] gi|1618429... 94 2e-18
>dbj|BAC06969.1| putative pre-mRNA splicing factor ATP-dependent RNA helicase [Oryza
sativa (japonica cultivar-group)]
Length = 1271
Score = 161 bits (408), Expect = 6e-39
Identities = 76/107 (71%), Positives = 94/107 (87%)
Frame = -2
Query: 665 YHELILTSKEYMQCATAVEPHWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEQEMEN 486
YHEL+LT+KEYMQC TAV+P WLAELGPMFFSVKE+DTSLL+HKK+QK++KTAME+EME
Sbjct: 1166 YHELVLTTKEYMQCVTAVDPQWLAELGPMFFSVKETDTSLLDHKKRQKEDKTAMEEEMEK 1225
Query: 485 LKKVQAELEPERKQKEKEKMAQHQQQISMPGLRKGSSTYLRPKKFGL 345
L++ QAE K++E+EK A+ QQQ+SMPGL+KG STYLRPK+ GL
Sbjct: 1226 LRQEQAEAARLEKEREREKRAKQQQQVSMPGLKKG-STYLRPKRMGL 1271
>ref|NP_196805.1| pre-mRNA splicing factor ATP-dependent RNA helicase -like protein;
protein id: At5g13010.1 [Arabidopsis thaliana]
gi|11358630|pir||T49915 pre-mRNA splicing factor
ATP-dependent RNA helicase-like protein - Arabidopsis
thaliana gi|7630057|emb|CAB88265.1| pre-mRNA splicing
factor ATP-dependent RNA helicase-like protein
[Arabidopsis thaliana]
Length = 1226
Score = 161 bits (407), Expect = 8e-39
Identities = 77/107 (71%), Positives = 94/107 (86%)
Frame = -2
Query: 665 YHELILTSKEYMQCATAVEPHWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEQEMEN 486
YHELILT+KEYMQCAT+VEPHWLAELGPMFFSVK+SDTS+LEHKKKQK+EK+ ME+EME
Sbjct: 1121 YHELILTTKEYMQCATSVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEKSGMEEEMEK 1180
Query: 485 LKKVQAELEPERKQKEKEKMAQHQQQISMPGLRKGSSTYLRPKKFGL 345
L++ Q E E K++E++K A+ QQQIS PGL+KG +T+LRPKK GL
Sbjct: 1181 LRRDQVESELRSKERERKKRAKQQQQISGPGLKKG-TTFLRPKKLGL 1226
>gb|AAG33228.2|AF305070_1 DEAH-box RNA helicase [Chlamydomonas reinhardtii]
Length = 1432
Score = 100 bits (248), Expect = 2e-20
Identities = 52/101 (51%), Positives = 68/101 (66%), Gaps = 4/101 (3%)
Frame = -2
Query: 665 YHELILTSKEYMQCATAVEPHWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEQEMEN 486
YHEL+ T+KEYMQC TAVEP WLAELGPMFFSVKE SLLE K+KQ+ +K AM EM
Sbjct: 1321 YHELVFTTKEYMQCVTAVEPEWLAELGPMFFSVKEVGGSLLESKRKQRADKEAMAAEMVA 1380
Query: 485 LKKVQAELEPERKQKEKEKMAQHQQQISMPGL----RKGSS 375
K + E +R ++ + ++ + I+ PGL RKG++
Sbjct: 1381 AKAKKEAEEADRLRQTEALRSRERDAIATPGLGGAGRKGTT 1421
>ref|NP_727764.1| CG32604-PB [Drosophila melanogaster] gi|10728242|gb|AAF48355.2|
CG32604-PB [Drosophila melanogaster]
Length = 534
Score = 93.6 bits (231), Expect = 2e-18
Identities = 52/93 (55%), Positives = 67/93 (71%), Gaps = 2/93 (2%)
Frame = -2
Query: 665 YHELILTSKEYMQCATAVEPHWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEQEMEN 486
YHELI+T+KEYMQCATAV+ +WLAELGPMFFSVKES S E KK+ + ME++M
Sbjct: 433 YHELIMTAKEYMQCATAVDGYWLAELGPMFFSVKESGRSGREKKKQAAEHLKEMEEQM-- 490
Query: 485 LKKVQAELEPERKQK--EKEKMAQHQQQISMPG 393
K Q E+E ERKQ+ E+E+ +Q+I+ PG
Sbjct: 491 -LKAQHEME-ERKQQAAEREEQLATKQEIATPG 521
>ref|NP_572947.1| CG32604-PA [Drosophila melanogaster] gi|16184298|gb|AAL13782.1|
LD24737p [Drosophila melanogaster]
gi|22832718|gb|AAF48351.2| CG32604-PA [Drosophila
melanogaster]
Length = 1222
Score = 93.6 bits (231), Expect = 2e-18
Identities = 52/93 (55%), Positives = 67/93 (71%), Gaps = 2/93 (2%)
Frame = -2
Query: 665 YHELILTSKEYMQCATAVEPHWLAELGPMFFSVKESDTSLLEHKKKQKQEKTAMEQEMEN 486
YHELI+T+KEYMQCATAV+ +WLAELGPMFFSVKES S E KK+ + ME++M
Sbjct: 1121 YHELIMTAKEYMQCATAVDGYWLAELGPMFFSVKESGRSGREKKKQAAEHLKEMEEQM-- 1178
Query: 485 LKKVQAELEPERKQK--EKEKMAQHQQQISMPG 393
K Q E+E ERKQ+ E+E+ +Q+I+ PG
Sbjct: 1179 -LKAQHEME-ERKQQAAEREEQLATKQEIATPG 1209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,017,140
Number of Sequences: 1393205
Number of extensions: 12003113
Number of successful extensions: 63330
Number of sequences better than 10.0: 682
Number of HSP's better than 10.0 without gapping: 49950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61180
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
