Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000194A_C01 KMC000194A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563746.1| expressed protein; protein id: At1g05710.1, sup... 72 4e-12
gb|AAM65410.1| ER33 protein [Arabidopsis thaliana] 72 4e-12
gb|AAL62355.1| unknown protein [Arabidopsis thaliana] 72 4e-12
gb|AAD46413.1|AF096263_1 ER33 protein [Lycopersicon esculentum] 70 1e-11
pir||D86191 hypothetical protein [imported] - Arabidopsis thalia... 61 6e-09
>ref|NP_563746.1| expressed protein; protein id: At1g05710.1, supported by cDNA:
3900. [Arabidopsis thaliana]
Length = 149
Score = 71.6 bits (174), Expect = 4e-12
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = -1
Query: 495 APYLESSPATMMEXIEPXSLRNRGLCLVPVSITMGVAESHGADIWAPIKT 346
APYL++ P E +E SLRNRGLCLVP+ T+GVA+S+GADIWAP+KT
Sbjct: 85 APYLQTVPDATQEELEQYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKT 134
>gb|AAM65410.1| ER33 protein [Arabidopsis thaliana]
Length = 139
Score = 71.6 bits (174), Expect = 4e-12
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = -1
Query: 495 APYLESSPATMMEXIEPXSLRNRGLCLVPVSITMGVAESHGADIWAPIKT 346
APYL++ P E +E SLRNRGLCLVP+ T+GVA+S+GADIWAP+KT
Sbjct: 75 APYLQTIPDATQEELEQYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKT 124
>gb|AAL62355.1| unknown protein [Arabidopsis thaliana]
Length = 171
Score = 71.6 bits (174), Expect = 4e-12
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = -1
Query: 495 APYLESSPATMMEXIEPXSLRNRGLCLVPVSITMGVAESHGADIWAPIKT 346
APYL++ P E +E SLRNRGLCLVP+ T+GVA+S+GADIWAP+KT
Sbjct: 107 APYLQTVPDATQEELEQYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKT 156
>gb|AAD46413.1|AF096263_1 ER33 protein [Lycopersicon esculentum]
Length = 140
Score = 70.5 bits (171), Expect = 1e-11
Identities = 34/60 (56%), Positives = 45/60 (74%), Gaps = 1/60 (1%)
Frame = -1
Query: 495 APYLESSPATMMEXIEPXSLRNRGLCLVPVSITMGVAESHGADIWAPIKTTSPKS-EKDI 319
APYL + P + + +P +LR++GLCLVPVS T+GVA S+GADIWAPIKT+ S E D+
Sbjct: 81 APYLGTMPMSKTQESQPYNLRSQGLCLVPVSYTVGVATSNGADIWAPIKTSQSSSPENDV 140
>pir||D86191 hypothetical protein [imported] - Arabidopsis thaliana
gi|4836922|gb|AAD30624.1|AC007153_16 Hypothetical
protein [Arabidopsis thaliana]
Length = 179
Score = 61.2 bits (147), Expect = 6e-09
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = -1
Query: 459 EXIEPXSLRNRGLCLVPVSITMGVAESHGADIWAPIKT 346
E +E SLRNRGLCLVP+ T+GVA+S+GADIWAP+KT
Sbjct: 127 EELEQYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKT 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,446,991
Number of Sequences: 1393205
Number of extensions: 7340593
Number of successful extensions: 13239
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13238
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
