Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000191A_C01 KMC000191A_c01
(924 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704526.1| hypothetical protein [Plasmodium falciparum 3D7... 40 0.038
ref|NP_494392.1| Predicted CDS, putative plasma membrane membran... 35 1.6
ref|NP_066469.1| NADH dehydrogenase subunit 5 [Rhodomonas salina... 35 1.6
ref|NP_740910.1| Putative nuclear protein family member, with a ... 34 3.6
ref|XP_286801.1| hypothetical protein XP_286801 [Mus musculus] 33 4.7
>ref|NP_704526.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499265|emb|CAD51345.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2568
Score = 40.4 bits (93), Expect = 0.038
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 13/144 (9%)
Frame = +1
Query: 208 NNSNRTKSSKQVDGEKYIKS------------KITELMTFIARKYPITTMIVHKD-FFLY 348
N N+ K +K KYIK KIT+ +T +KY +T + K+ +
Sbjct: 38 NRRNKIKGNKNASIIKYIKCLGNIKKVNNDIFKITKRLTIHTKKYNLTNQQIKKNKIIIQ 97
Query: 349 RERGNHQIVN*QTC*MGQNQKLKRQLYFNISYLASNPVESNKSCSATR*I*IYKGRKRPT 528
R +I N + Q++K+K + +I+Y N ++ N+ + + +
Sbjct: 98 RNIIQTKIFNNASVHKQQHRKMKESKFMDIAYRKKNEIKKNEIKRNESERNVIERNESER 157
Query: 529 KVKKKGRIKKKEIQNKKPKDKNIS 600
V KK + KK + K KN S
Sbjct: 158 NVSKK-NVSKKNVSKKNVSKKNES 180
>ref|NP_494392.1| Predicted CDS, putative plasma membrane membrane protein, with at
least 3 transmembrane domains, of eukaryotic origin
[Caenorhabditis elegans] gi|7331719|gb|AAF60407.1|
Hypothetical protein Y110A2AL.12 [Caenorhabditis
elegans]
Length = 405
Score = 35.0 bits (79), Expect = 1.6
Identities = 19/74 (25%), Positives = 32/74 (42%)
Frame = +1
Query: 403 NQKLKRQLYFNISYLASNPVESNKSCSATR*I*IYKGRKRPTKVKKKGRIKKKEIQNKKP 582
N K+ + FN+ + + + +K+ K +KK K+ Q K+P
Sbjct: 143 NIKISKIKLFNLKFAQKTQISKK-----------FSKKKKQIKFQKKSENNLKKFQKKEP 191
Query: 583 KDKNISILSRKPKN 624
K KN +L + PKN
Sbjct: 192 KKKNFLLLKKIPKN 205
>ref|NP_066469.1| NADH dehydrogenase subunit 5 [Rhodomonas salina]
gi|10444166|gb|AAG17740.1|AF288090_16 NADH dehydrogenase
subunit 5 [Rhodomonas salina]
Length = 665
Score = 35.0 bits (79), Expect = 1.6
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -2
Query: 698 HQPHFVGFCLQW*LLTVFLTPRVFGFLGFLLKMLIFLSFGFLFWISFFFILPF-FFTLVG 522
H+P+F G LL++F F+GFL + L F+ FG FW S F+LP TL
Sbjct: 458 HEPNF-GMLFPLILLSIFSI-----FIGFLTREL-FIGFGTPFWSSSIFVLPVNTTTLDF 510
Query: 521 RFLPL 507
F+P+
Sbjct: 511 EFMPI 515
>ref|NP_740910.1| Putative nuclear protein family member, with a coiled coil-4
domain, nematode specific [Caenorhabditis elegans]
gi|7494901|pir||T18726 hypothetical protein B03797.7.1 -
Caenorhabditis elegans gi|5824364|emb|CAB54186.1|
Hypothetical protein B0379.7 [Caenorhabditis elegans]
Length = 409
Score = 33.9 bits (76), Expect = 3.6
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Frame = +1
Query: 451 SNPVESNKSCSATR*I*IYKGRKRPTKVKKKGRIKKKEIQNKKPKDKNISILSRKPKNPK 630
S P S++S SA T+ KK +IKKK+ NKK KDK S + KN K
Sbjct: 195 SGPASSDQSSSAPA----------STESKKSKKIKKKK--NKKSKDKKKSNSRKNKKNKK 242
Query: 631 TLGVRKTVRSYHCKQNPTKWGWCAFYEL--TPPSQSQYTVLYLHRVYQLYPQ----TARE 792
+ G + T S N + G EL P + T + + Q P+ TA E
Sbjct: 243 SKG-KSTSTSEPPTPNQPETGVQTANELRNDAPESNVNTAMSIQSPVQDTPEPDVKTASE 301
Query: 793 GKTD 804
K D
Sbjct: 302 AKND 305
>ref|XP_286801.1| hypothetical protein XP_286801 [Mus musculus]
Length = 127
Score = 33.5 bits (75), Expect = 4.7
Identities = 22/63 (34%), Positives = 30/63 (46%), Gaps = 6/63 (9%)
Frame = -2
Query: 686 FVGFCLQW*LLTVFLTPRVFGFLGFLLKMLIFLSFGFLFWISFFF------ILPFFFTLV 525
F+ L + LL FL +F FLL +L+ F F F+ FFF +L FFT +
Sbjct: 21 FLTLLLLFLLLLFFLLLFLFFLFLFLLLLLLLFFFFFFFFFFFFFLLLLLLLLDLFFTYI 80
Query: 524 GRF 516
F
Sbjct: 81 SNF 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 742,639,727
Number of Sequences: 1393205
Number of extensions: 16104973
Number of successful extensions: 58325
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 51006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56602
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51027805888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
