Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000190A_C02 KMC000190A_c02
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200845.1| putative protein; protein id: At5g60370.1, supp... 110 2e-23
ref|XP_233480.1| similar to RIKEN cDNA 3110037I16 [Mus musculus]... 59 5e-08
ref|NP_082733.1| RIKEN cDNA 3110037I16 [Mus musculus] gi|1285181... 59 7e-08
gb|AAH21969.1|AAH21969 hypothetical protein FLJ21144 [Homo sapiens] 54 2e-06
ref|NP_073611.1| hypothetical protein FLJ21144 [Homo sapiens] gi... 54 2e-06
>ref|NP_200845.1| putative protein; protein id: At5g60370.1, supported by cDNA:
gi_18175766 [Arabidopsis thaliana]
gi|9757741|dbj|BAB08222.1|
emb|CAB72181.1~gene_id:MUF9.2~similar to unknown protein
[Arabidopsis thaliana] gi|18175767|gb|AAL59924.1|
unknown protein [Arabidopsis thaliana]
gi|23296592|gb|AAN13127.1| unknown protein [Arabidopsis
thaliana]
Length = 413
Score = 110 bits (274), Expect = 2e-23
Identities = 52/102 (50%), Positives = 70/102 (67%), Gaps = 2/102 (1%)
Frame = -1
Query: 612 ALTLDDVVRYYKNTCSMLLPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEV 433
A TL+++VRYY+NT ML A++QLLL+YE+QKD S+I E +F +D EW+ S+ IE
Sbjct: 304 AQTLEEIVRYYENTFQMLPIANNQLLLKYEFQKDQSIIAEIRFNHDHEWVMSKYREVIEF 363
Query: 432 WLGKRETTYVPEEENWKCRFCQFATVC--DASTDSKGTMANT 313
W +RE Y PEEE WKCR+CQFA C + S +S T + T
Sbjct: 364 WRNEREAGYTPEEERWKCRYCQFAKSCPGNPSFESPSTSSPT 405
>ref|XP_233480.1| similar to RIKEN cDNA 3110037I16 [Mus musculus] [Rattus norvegicus]
Length = 373
Score = 58.9 bits (141), Expect = 5e-08
Identities = 24/70 (34%), Positives = 42/70 (59%)
Frame = -1
Query: 558 LPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEVWLGKRETTYVPEEENWKC 379
LPA D L L Y +Q+ + +G + A++ + +KS++ + W+G+R+ V EE WKC
Sbjct: 284 LPAIDTLKLEYVHQETATTLGTEIVAFEEKEVKSKVRHFVAYWMGRRDPQGVDVEEAWKC 343
Query: 378 RFCQFATVCD 349
R C + +C+
Sbjct: 344 RTCDYVDICE 353
>ref|NP_082733.1| RIKEN cDNA 3110037I16 [Mus musculus] gi|12851810|dbj|BAB29174.1|
unnamed protein product [Mus musculus]
gi|22169867|gb|AAH23360.1| RIKEN cDNA 3110037I16 gene
[Mus musculus]
Length = 373
Score = 58.5 bits (140), Expect = 7e-08
Identities = 24/70 (34%), Positives = 42/70 (59%)
Frame = -1
Query: 558 LPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEVWLGKRETTYVPEEENWKC 379
LPA D L L Y +Q+ +++G + A++ + +KS++ + W+G R+ V EE WKC
Sbjct: 284 LPAIDTLKLEYIHQETATILGTEIVAFEEKEVKSKVQHYVAYWMGHRDPQGVDVEEAWKC 343
Query: 378 RFCQFATVCD 349
R C + +C+
Sbjct: 344 RTCDYVDICE 353
>gb|AAH21969.1|AAH21969 hypothetical protein FLJ21144 [Homo sapiens]
Length = 373
Score = 53.5 bits (127), Expect = 2e-06
Identities = 25/82 (30%), Positives = 47/82 (56%)
Frame = -1
Query: 558 LPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEVWLGKRETTYVPEEENWKC 379
LP D L + Y +Q+ +++G + A+ + +++++ + W+G RE V EE WKC
Sbjct: 284 LPVIDILKIEYIHQETATVLGTEIVAFKEKEVRAKVQHYMAYWMGHREPQGVDVEEAWKC 343
Query: 378 RFCQFATVCDASTDSKGTMANT 313
R C +A +C+ S G +++T
Sbjct: 344 RTCTYADICEWRKGS-GVLSST 364
>ref|NP_073611.1| hypothetical protein FLJ21144 [Homo sapiens]
gi|10437187|dbj|BAB15008.1| unnamed protein product
[Homo sapiens]
Length = 373
Score = 53.5 bits (127), Expect = 2e-06
Identities = 25/82 (30%), Positives = 47/82 (56%)
Frame = -1
Query: 558 LPAHDQLLLRYEYQKDHSLIGEDKFAYDSEWLKSQMHRCIEVWLGKRETTYVPEEENWKC 379
LP D L + Y +Q+ +++G + A+ + +++++ + W+G RE V EE WKC
Sbjct: 284 LPVIDILKIEYIHQETATVLGTEIVAFKEKEVRAKVQHYMAYWMGHREPQGVDVEEAWKC 343
Query: 378 RFCQFATVCDASTDSKGTMANT 313
R C +A +C+ S G +++T
Sbjct: 344 RTCTYADICEWRKGS-GVLSST 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,656,535
Number of Sequences: 1393205
Number of extensions: 11274571
Number of successful extensions: 30770
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30281
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
