Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000189A_C01 KMC000189A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83085.1| cycloartenol synthase [Betula platyphylla] 119 4e-26
dbj|BAA84603.1| oxidosqualene cyclase [Allium macrostemon] 118 8e-26
dbj|BAB83253.1| cycloartenol synthase [Costus speciosus] 117 2e-25
dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla] 117 2e-25
dbj|BAA33462.1| Oxidosqualene Cyclase [Panax ginseng] 116 2e-25
>dbj|BAB83085.1| cycloartenol synthase [Betula platyphylla]
Length = 767
Score = 119 bits (297), Expect = 4e-26
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = -2
Query: 638 EAGQAQRDPAPLHRAAKVLINSQMENGEFPQQEIMGIFNKTCTISYSAYRNIFPIWALGV 459
+AGQA+RDP PLHRAA++LINSQMENG+FPQ+EIMG+FNK C ISYSAYRNIFPIWALG
Sbjct: 699 DAGQAERDPTPLHRAARILINSQMENGDFPQEEIMGVFNKNCMISYSAYRNIFPIWALGE 758
Query: 458 YRSHVL 441
YR VL
Sbjct: 759 YRCRVL 764
>dbj|BAA84603.1| oxidosqualene cyclase [Allium macrostemon]
Length = 762
Score = 118 bits (295), Expect = 8e-26
Identities = 55/66 (83%), Positives = 59/66 (89%)
Frame = -2
Query: 638 EAGQAQRDPAPLHRAAKVLINSQMENGEFPQQEIMGIFNKTCTISYSAYRNIFPIWALGV 459
+AGQAQRD PLHRAAKVLIN QMENGEFPQQEIMG+FN+ C ISYSAYRNIFPIWALG
Sbjct: 691 DAGQAQRDAEPLHRAAKVLINMQMENGEFPQQEIMGVFNRNCMISYSAYRNIFPIWALGE 750
Query: 458 YRSHVL 441
YR+ VL
Sbjct: 751 YRTRVL 756
>dbj|BAB83253.1| cycloartenol synthase [Costus speciosus]
Length = 759
Score = 117 bits (292), Expect = 2e-25
Identities = 54/66 (81%), Positives = 57/66 (85%)
Frame = -2
Query: 638 EAGQAQRDPAPLHRAAKVLINSQMENGEFPQQEIMGIFNKTCTISYSAYRNIFPIWALGV 459
+AGQ +RDP PLHRAAKVLIN QMENGEFPQQEIMG+FNK C ISYS YRNIFPIWALG
Sbjct: 689 DAGQGERDPKPLHRAAKVLINMQMENGEFPQQEIMGVFNKNCMISYSEYRNIFPIWALGE 748
Query: 458 YRSHVL 441
YR VL
Sbjct: 749 YRRRVL 754
>dbj|BAB83086.1| cycloartenol synthase [Betula platyphylla]
Length = 757
Score = 117 bits (292), Expect = 2e-25
Identities = 52/66 (78%), Positives = 60/66 (90%)
Frame = -2
Query: 638 EAGQAQRDPAPLHRAAKVLINSQMENGEFPQQEIMGIFNKTCTISYSAYRNIFPIWALGV 459
EAGQA+RDP PLHRAA+VLINSQMENG+FPQ+EIMG+FN+ C I+Y+AYRNIFPIWALG
Sbjct: 689 EAGQAERDPTPLHRAARVLINSQMENGDFPQEEIMGVFNRNCMITYAAYRNIFPIWALGE 748
Query: 458 YRSHVL 441
YR VL
Sbjct: 749 YRCRVL 754
>dbj|BAA33462.1| Oxidosqualene Cyclase [Panax ginseng]
Length = 780
Score = 116 bits (291), Expect = 2e-25
Identities = 54/66 (81%), Positives = 60/66 (90%)
Frame = -2
Query: 638 EAGQAQRDPAPLHRAAKVLINSQMENGEFPQQEIMGIFNKTCTISYSAYRNIFPIWALGV 459
EAGQAQRDP+PLHRAAKVL+NSQM+NG FPQQEI+G+FNK C ISYSAYRNIFPIWALG
Sbjct: 702 EAGQAQRDPSPLHRAAKVLMNSQMKNGVFPQQEIVGVFNKNCMISYSAYRNIFPIWALGE 761
Query: 458 YRSHVL 441
Y + VL
Sbjct: 762 YLNRVL 767
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,370,368
Number of Sequences: 1393205
Number of extensions: 12980139
Number of successful extensions: 33053
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 31414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32929
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
