Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000188A_C01 KMC000188A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86162 hypothetical protein F15K9.23 - Arabidopsis thaliana... 90 4e-21
gb|EAA17620.1| hypothetical protein [Plasmodium yoelii yoelii] 39 0.043
ref|NP_011888.1| myosin class II; Myo1p [Saccharomyces cerevisia... 37 0.21
gb|AAO83114.1| hypothetical protein [Enterococcus faecalis V583] 35 0.61
gb|AAA28965.1| tropomyosin isoform 9E 35 0.80
>pir||H86162 hypothetical protein F15K9.23 - Arabidopsis thaliana
gi|3850577|gb|AAC72117.1| This gene may be cut off.
[Arabidopsis thaliana]
Length = 160
Score = 89.7 bits (221), Expect(2) = 4e-21
Identities = 42/84 (50%), Positives = 66/84 (78%)
Frame = -3
Query: 322 RRQRVIDKVKRKADTLAYELEEAMKRDLTEAMADLDTFVKVLGKPYQDEAQNKLNKLVEI 143
R + +I KV + AD LA +LE+AM++DL++A ++L FV ++ KPY++EAQ +L++L+ I
Sbjct: 71 RWRAIIGKVNKVADALAQQLEDAMQKDLSDATSNLVNFVNIVAKPYREEAQLRLDRLLGI 130
Query: 142 QEELSNVEKKLRTLQIDIQNLHVS 71
Q+ELS++ KL+ LQ+DI NLHVS
Sbjct: 131 QKELSDIRSKLQLLQVDIDNLHVS 154
Score = 33.1 bits (74), Expect(2) = 4e-21
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 419 TTDICTANHNGRSSCSWYLFCWR 351
T+++ +H GRSSCSW L WR
Sbjct: 51 TSNLSATDHTGRSSCSWPLLRWR 73
>gb|EAA17620.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1611
Score = 38.9 bits (89), Expect = 0.043
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = -3
Query: 301 KVKRKADTLAYELEEAMKRDLTEAMADLDTFVKVLGKPYQDEAQNKLNKLVEIQEELSNV 122
K+K + L E EE K + + ++DTF K+L ++ +N+ +K+ E +EL N+
Sbjct: 993 KIKELEEKLQKEKEEK-KNIINDVKDEIDTFTKIL-----EKKENENHKIKEKLKELKNI 1046
Query: 121 EKKLRTLQIDIQNL 80
E+K QI+ +L
Sbjct: 1047 EEKYENTQINFDSL 1060
>ref|NP_011888.1| myosin class II; Myo1p [Saccharomyces cerevisiae]
gi|730092|sp|P08964|MYS1_YEAST Myosin-1 isoform (Type II
myosin) gi|630046|pir||S46773 myosin heavy chain - yeast
(Saccharomyces cerevisiae) gi|500691|gb|AAB68872.1|
Myo1p: Myosin class V, alpha-helical middle
[Saccharomyces cerevisiae]
Length = 1928
Score = 36.6 bits (83), Expect = 0.21
Identities = 28/117 (23%), Positives = 57/117 (47%), Gaps = 4/117 (3%)
Frame = -3
Query: 415 LTSVLQTTMEDLL----ALGICSAGGYLAISNFPSRRQRVIDKVKRKADTLAYELEEAMK 248
LT + Q DL AL I +A A+S+ + + + +K+K +TL ++E+ +
Sbjct: 1680 LTKIKQELESDLNQKTDALQISNA----ALSSSTQKNKEITEKIKYLEETLQLQMEQNSR 1735
Query: 247 RDLTEAMADLDTFVKVLGKPYQDEAQNKLNKLVEIQEELSNVEKKLRTLQIDIQNLH 77
+L ++ Y+D+ ++ K +++ EE ++K LQ+ ++NLH
Sbjct: 1736 N------GELVKTLQASCNGYKDKFDDEKQKNIDLYEENQTLQKLNTDLQLQLKNLH 1786
>gb|AAO83114.1| hypothetical protein [Enterococcus faecalis V583]
Length = 202
Score = 35.0 bits (79), Expect = 0.61
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = -3
Query: 316 QRVIDKVKRKADTLAYELEEAMK-RDLTEAMADLDTFVKVLGKPYQ---DEAQNKLNKLV 149
Q +++ K T+ E +E + ++ + MAD +T K+L + Q DE ++
Sbjct: 118 QDIVELEKNNKTTITTEEKEITELKEQPDEMADKETQKKILEQKIQFKKDELATLTEEIA 177
Query: 148 EIQEELSNVEKKLRTLQIDIQNLHV 74
QEE++++E+KL T + LH+
Sbjct: 178 TKQEEINDLEQKLSTFSKKPEGLHL 202
>gb|AAA28965.1| tropomyosin isoform 9E
Length = 270
Score = 34.7 bits (78), Expect = 0.80
Identities = 23/70 (32%), Positives = 39/70 (54%)
Frame = -3
Query: 304 DKVKRKADTLAYELEEAMKRDLTEAMADLDTFVKVLGKPYQDEAQNKLNKLVEIQEELSN 125
D+V RK + +LE A +R + EA DL+ ++ A+ NK+VE++EEL
Sbjct: 163 DEVARKLAMVEADLERAEERAMVEA--DLERA--------EERAEQGENKIVELEEELRL 212
Query: 124 VEKKLRTLQI 95
V L++L++
Sbjct: 213 VGNNLKSLEV 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,159,578
Number of Sequences: 1393205
Number of extensions: 7917223
Number of successful extensions: 27941
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 27025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27899
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
