Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000187A_C02 KMC000187A_c02
(754 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86194 hypothetical protein [imported] - Arabidopsis thalia... 69 9e-11
ref|NP_172086.1| hypothetical protein; protein id: At1g05950.1 [... 69 9e-11
gb|EAA16323.1| ATP-dependent protease la [Plasmodium yoelii yoelii] 36 0.52
pir||S74225 leptin receptor, isoform Ob-Rf - rat gi|1395213|gb|A... 32 7.5
>pir||F86194 hypothetical protein [imported] - Arabidopsis thaliana
gi|8810459|gb|AAF80120.1|AC024174_2 Contains similarity
to an unknown protein T11A7.7 gi|2335096 from Arabidopsis
thaliana BAC T11A7 gb|AC002339 and contains a tropomyosin
PF|00261 domain. ESTs gb|AI995205, gb|N37925, gb|F13889,
gb|AV523107, gb|AV535948, gb|AV558461, gb|F13888 come
from this gene
Length = 1628
Score = 68.6 bits (166), Expect = 9e-11
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = -2
Query: 747 IQRISGGEDVLALKIDSIIEGCNDTWVRN--QGSMCPLIEDQCFPPYAKRKRLTDAV-LM 577
IQ I G + L++++++E CN+T+ R Q S+ D+ KR +L++ +
Sbjct: 1500 IQNIKGDWE---LQLETVLECCNETYPRRNLQESL-----DKSACQSNKRLKLSETLPST 1551
Query: 576 QSPCQELDGVCHANNWILPTYSLSQSAGGFQANLTVKGPDFESSCGGNICCHPREARESA 397
+S CQ LD +C NNW+LP Y ++ S GG++A + + G + G EARESA
Sbjct: 1552 KSLCQRLDDICLMNNWVLPNYRVAPSDGGYEAEVRITGNHVACTIHGEEKSDAEEARESA 1611
Query: 396 AAQMLVNLR 370
AA +L L+
Sbjct: 1612 AACLLTKLQ 1620
>ref|NP_172086.1| hypothetical protein; protein id: At1g05950.1 [Arabidopsis
thaliana]
Length = 590
Score = 68.6 bits (166), Expect = 9e-11
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = -2
Query: 747 IQRISGGEDVLALKIDSIIEGCNDTWVRN--QGSMCPLIEDQCFPPYAKRKRLTDAV-LM 577
IQ I G + L++++++E CN+T+ R Q S+ D+ KR +L++ +
Sbjct: 462 IQNIKGDWE---LQLETVLECCNETYPRRNLQESL-----DKSACQSNKRLKLSETLPST 513
Query: 576 QSPCQELDGVCHANNWILPTYSLSQSAGGFQANLTVKGPDFESSCGGNICCHPREARESA 397
+S CQ LD +C NNW+LP Y ++ S GG++A + + G + G EARESA
Sbjct: 514 KSLCQRLDDICLMNNWVLPNYRVAPSDGGYEAEVRITGNHVACTIHGEEKSDAEEARESA 573
Query: 396 AAQMLVNLR 370
AA +L L+
Sbjct: 574 AACLLTKLQ 582
>gb|EAA16323.1| ATP-dependent protease la [Plasmodium yoelii yoelii]
Length = 779
Score = 36.2 bits (82), Expect = 0.52
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 83 EDLYIFKSTYKIKIDLLRSFIK-------LS*IFLLKSSF*DRQKKSHDKRYLIYVDRFT 241
ED+Y+FK +IKIDL F+K I LLK +K H+K Y +++++
Sbjct: 332 EDIYLFKIKKEIKIDLENKFLKEKKELLITEQINLLKKKI-GHEKTEHEKNYETFINKYN 390
Query: 242 N 244
N
Sbjct: 391 N 391
>pir||S74225 leptin receptor, isoform Ob-Rf - rat gi|1395213|gb|AAB03088.1|
leptin receptor
Length = 895
Score = 32.3 bits (72), Expect = 7.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 582 LMQSPCQELDGVCHANNWILPTYSLSQSAGGFQANLTVKGPDFESSCGGNI 430
++Q CQ LDG+ + +NW P Y+L + ++GP+F G+I
Sbjct: 606 VVQVRCQRLDGLGYWSNWSSPAYTLV-----MDVKVPMRGPEFWRIMDGDI 651
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,386,055
Number of Sequences: 1393205
Number of extensions: 12832987
Number of successful extensions: 26986
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26983
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
