Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000186A_C01 KMC000186A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO72533.1| pyruvate decarboxylase 1 [Lotus corniculatus] 201 1e-50
sp|P51851|DCP2_PEA Pyruvate decarboxylase isozyme 2 (PDC) gi|214... 190 2e-47
sp|P51848|DCP2_ORYSA Pyruvate decarboxylase isozyme 2 (PDC) gi|7... 179 3e-44
emb|CAB61763.1| pyruvate decarboxylase [Saccharum officinarum] 179 4e-44
gb|AAL37492.1| pyruvate decarboxylase [Fragaria x ananassa] 178 5e-44
>gb|AAO72533.1| pyruvate decarboxylase 1 [Lotus corniculatus]
Length = 606
Score = 201 bits (510), Expect = 1e-50
Identities = 98/124 (79%), Positives = 104/124 (83%)
Frame = -1
Query: 687 VTAQDVSTMLRCGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIEAIHHGEGKCW 508
VTAQDVSTMLRCGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIEAIH+GEGKCW
Sbjct: 488 VTAQDVSTMLRCGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIEAIHNGEGKCW 547
Query: 507 TSKVFCEEELVEAIATATGPKKDCLCFIEVIVHQG*YQQRVA*MGLQGLCCQWSSSQSSV 328
TSKVFCEEELVEAIATATGPKKDCLCFIEVIVH+ + + +W S S+
Sbjct: 548 TSKVFCEEELVEAIATATGPKKDCLCFIEVIVHKDDTSKEL---------LEWGSRVSAA 598
Query: 327 NFRP 316
N RP
Sbjct: 599 NGRP 602
Score = 58.5 bits (140), Expect = 8e-08
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = -2
Query: 407 KDDTSKELLEWGSRVSAANGRPPNPQ 330
KDDTSKELLEWGSRVSAANGRPPNPQ
Sbjct: 581 KDDTSKELLEWGSRVSAANGRPPNPQ 606
>sp|P51851|DCP2_PEA Pyruvate decarboxylase isozyme 2 (PDC) gi|2146788|pir||S65471
pyruvate decarboxylase (EC 4.1.1.1) (clone PDC2) -
garden pea (fragment) gi|1177605|emb|CAA91445.1|
pyruvate decarboxylase [Pisum sativum]
Length = 405
Score = 190 bits (482), Expect = 2e-47
Identities = 92/124 (74%), Positives = 101/124 (81%)
Frame = -1
Query: 687 VTAQDVSTMLRCGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIEAIHHGEGKCW 508
VTAQDVSTMLRCGQ TIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGL++AIH+GEGKCW
Sbjct: 287 VTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCW 346
Query: 507 TSKVFCEEELVEAIATATGPKKDCLCFIEVIVHQG*YQQRVA*MGLQGLCCQWSSSQSSV 328
T+KVFCEEELVEAIA ATGPKKD LCFIEVIVH+ + + +W S S+
Sbjct: 347 TTKVFCEEELVEAIAKATGPKKDSLCFIEVIVHKDDTSKEL---------LEWGSRVSAA 397
Query: 327 NFRP 316
N RP
Sbjct: 398 NSRP 401
Score = 56.2 bits (134), Expect = 4e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -2
Query: 407 KDDTSKELLEWGSRVSAANGRPPNPQ 330
KDDTSKELLEWGSRVSAAN RPPNPQ
Sbjct: 380 KDDTSKELLEWGSRVSAANSRPPNPQ 405
>sp|P51848|DCP2_ORYSA Pyruvate decarboxylase isozyme 2 (PDC) gi|7436707|pir||T03295
pyruvate decarboxylase (EC 4.1.1.1) 2 - rice
gi|1009710|gb|AAA90948.1| pyruvate decarboxylase 2
gi|1777455|gb|AAB40530.1| pyruvate decarboxylase 2
Length = 603
Score = 179 bits (454), Expect = 3e-44
Identities = 86/124 (69%), Positives = 96/124 (77%)
Frame = -1
Query: 687 VTAQDVSTMLRCGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIEAIHHGEGKCW 508
VTAQDVSTM+RC QN+IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGL++AIH+GEGKCW
Sbjct: 485 VTAQDVSTMIRCAQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCW 544
Query: 507 TSKVFCEEELVEAIATATGPKKDCLCFIEVIVHQG*YQQRVA*MGLQGLCCQWSSSQSSV 328
TSKV CEEEL EAI A G KKDCLCFIEVI H+ + + +W S S+
Sbjct: 545 TSKVKCEEELTEAIGMALGEKKDCLCFIEVIAHKDDTSKEL---------LEWGSRVSAA 595
Query: 327 NFRP 316
N RP
Sbjct: 596 NSRP 599
Score = 56.2 bits (134), Expect = 4e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -2
Query: 407 KDDTSKELLEWGSRVSAANGRPPNPQ 330
KDDTSKELLEWGSRVSAAN RPPNPQ
Sbjct: 578 KDDTSKELLEWGSRVSAANSRPPNPQ 603
>emb|CAB61763.1| pyruvate decarboxylase [Saccharum officinarum]
Length = 212
Score = 179 bits (453), Expect = 4e-44
Identities = 87/124 (70%), Positives = 96/124 (77%)
Frame = -1
Query: 687 VTAQDVSTMLRCGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIEAIHHGEGKCW 508
VTAQDVSTMLRC QN+IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGL++AIH+GEGKCW
Sbjct: 94 VTAQDVSTMLRCEQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCW 153
Query: 507 TSKVFCEEELVEAIATATGPKKDCLCFIEVIVHQG*YQQRVA*MGLQGLCCQWSSSQSSV 328
TSKV CEEEL AI TA G KKDCLCFIEVI H+ + + +W S S+
Sbjct: 154 TSKVKCEEELTAAIETALGEKKDCLCFIEVIAHKDDTSKEL---------LEWGSRVSAA 204
Query: 327 NFRP 316
N RP
Sbjct: 205 NSRP 208
Score = 56.2 bits (134), Expect = 4e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -2
Query: 407 KDDTSKELLEWGSRVSAANGRPPNPQ 330
KDDTSKELLEWGSRVSAAN RPPNPQ
Sbjct: 187 KDDTSKELLEWGSRVSAANSRPPNPQ 212
>gb|AAL37492.1| pyruvate decarboxylase [Fragaria x ananassa]
Length = 605
Score = 178 bits (452), Expect = 5e-44
Identities = 87/124 (70%), Positives = 98/124 (78%)
Frame = -1
Query: 687 VTAQDVSTMLRCGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIEAIHHGEGKCW 508
VTAQDVSTM+R GQ TIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGL++AIH+GEGKCW
Sbjct: 487 VTAQDVSTMIRNGQRTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCW 546
Query: 507 TSKVFCEEELVEAIATATGPKKDCLCFIEVIVHQG*YQQRVA*MGLQGLCCQWSSSQSSV 328
T+KV CEEEL+EAI TA GPKKD LCFIEVIVH+ + + +W S S+
Sbjct: 547 TTKVRCEEELIEAIETANGPKKDRLCFIEVIVHKDDTSKEL---------LEWGSRVSAA 597
Query: 327 NFRP 316
N RP
Sbjct: 598 NSRP 601
Score = 56.2 bits (134), Expect = 4e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -2
Query: 407 KDDTSKELLEWGSRVSAANGRPPNPQ 330
KDDTSKELLEWGSRVSAAN RPPNPQ
Sbjct: 580 KDDTSKELLEWGSRVSAANSRPPNPQ 605
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,833,074
Number of Sequences: 1393205
Number of extensions: 12714013
Number of successful extensions: 29311
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 28444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29283
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
