Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000180A_C01 KMC000180A_c01
(734 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF17257.1|AF210747_1 penicillin-binding protein 1A [Streptoc... 36 0.49
pir||S28038 penicillin-binding protein 1a - Streptococcus pneumo... 36 0.49
ref|NP_357923.1| Penicillin-binding protein 1A [Streptococcus pn... 36 0.49
gb|AAD43067.1|AF139884_1 penicillin-binding protein 1a [Streptoc... 36 0.49
dbj|BAA32074.1| penicillin binding protein 1A [Streptococcus pne... 36 0.49
>gb|AAF17257.1|AF210747_1 penicillin-binding protein 1A [Streptococcus pneumoniae]
Length = 719
Score = 36.2 bits (82), Expect = 0.49
Identities = 21/65 (32%), Positives = 32/65 (48%)
Frame = -2
Query: 601 SFFSMPGPPKPDGQASSSTLQDKTIGKSWKPPINTNSSKRITEKVNRTTKQSRTSSNTTR 422
S +S P P +P SSS+ D + +S +TN+S T N T+QS T+ +
Sbjct: 654 STWSSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNS--TTTNPNNNTQQSNTTPDQQN 711
Query: 421 ENASP 407
+N P
Sbjct: 712 QNPQP 716
>pir||S28038 penicillin-binding protein 1a - Streptococcus pneumoniae (strain
45607) (fragment) gi|47420|emb|CAA48073.1|
penicillin-binding protein 1a [Streptococcus pneumoniae]
Length = 719
Score = 36.2 bits (82), Expect = 0.49
Identities = 21/65 (32%), Positives = 32/65 (48%)
Frame = -2
Query: 601 SFFSMPGPPKPDGQASSSTLQDKTIGKSWKPPINTNSSKRITEKVNRTTKQSRTSSNTTR 422
S +S P P +P SSS+ D + +S +TN+S T N T+QS T+ +
Sbjct: 654 STWSSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNS--TTTNPNNNTQQSNTTPDQQN 711
Query: 421 ENASP 407
+N P
Sbjct: 712 QNPQP 716
>ref|NP_357923.1| Penicillin-binding protein 1A [Streptococcus pneumoniae R6]
gi|476822|pir||A42893 penicillin-binding protein 1A -
Streptococcus pneumoniae gi|25297718|pir||A97913
peptidoglycan glycosyltransferase (EC 2.4.1.129)
[imported] - Streptococcus pneumoniae (strain R6)
gi|153768|gb|AAA26956.1| penicillin-binding protein
gi|15457886|gb|AAK99133.1| Penicillin-binding protein 1A
[Streptococcus pneumoniae R6]
Length = 719
Score = 36.2 bits (82), Expect = 0.49
Identities = 21/65 (32%), Positives = 32/65 (48%)
Frame = -2
Query: 601 SFFSMPGPPKPDGQASSSTLQDKTIGKSWKPPINTNSSKRITEKVNRTTKQSRTSSNTTR 422
S +S P P +P SSS+ D + +S +TN+S T N T+QS T+ +
Sbjct: 654 STWSSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNS--TTTNPNNNTQQSNTTPDQQN 711
Query: 421 ENASP 407
+N P
Sbjct: 712 QNPQP 716
>gb|AAD43067.1|AF139884_1 penicillin-binding protein 1a [Streptococcus pneumoniae]
gi|5410461|gb|AAD43068.1|AF139885_1 penicillin-binding
protein 1a [Streptococcus pneumoniae]
gi|5410463|gb|AAD43069.1|AF139886_1 penicillin-binding
protein 1a [Streptococcus pneumoniae]
Length = 719
Score = 36.2 bits (82), Expect = 0.49
Identities = 21/65 (32%), Positives = 32/65 (48%)
Frame = -2
Query: 601 SFFSMPGPPKPDGQASSSTLQDKTIGKSWKPPINTNSSKRITEKVNRTTKQSRTSSNTTR 422
S +S P P +P SSS+ D + +S +TN+S T N T+QS T+ +
Sbjct: 654 STWSSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNS--TTTNPNNNTQQSNTTPDQQN 711
Query: 421 ENASP 407
+N P
Sbjct: 712 QNPQP 716
>dbj|BAA32074.1| penicillin binding protein 1A [Streptococcus pneumoniae]
Length = 398
Score = 36.2 bits (82), Expect = 0.49
Identities = 21/65 (32%), Positives = 32/65 (48%)
Frame = -2
Query: 601 SFFSMPGPPKPDGQASSSTLQDKTIGKSWKPPINTNSSKRITEKVNRTTKQSRTSSNTTR 422
S +S P P +P SSS+ D + +S +TN+S T N T+QS T+ +
Sbjct: 335 STWSSPAPQQPPSTESSSSSSDSSTSQSSSTTPSTNNS--TTTNPNNNTQQSNTTPDQQN 392
Query: 421 ENASP 407
+N P
Sbjct: 393 QNPQP 397
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,725,965
Number of Sequences: 1393205
Number of extensions: 12407106
Number of successful extensions: 32463
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 30168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32401
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
