Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000176A_C01 KMC000176A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN75157.1| ZNF1 [Cryptococcus neoformans var. grubii] 32 0.45
gb|EAA07837.1| agCP1227 [Anopheles gambiae str. PEST] 35 0.59
gb|AAL31318.1|L00966_1 ATP/GTP binding site motif A (PROSITE PS0... 34 1.0
ref|XP_133139.3| similar to KIAA1932 protein [Homo sapiens] [Mus... 34 1.0
gb|EAA32866.1| hypothetical protein [Neurospora crassa] 34 1.0
>gb|AAN75157.1| ZNF1 [Cryptococcus neoformans var. grubii]
Length = 539
Score = 32.3 bits (72), Expect(2) = 0.45
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 381 EVKEQPMAKIWRQKI-Q*PKHRRETPTVQLQKYHLCRYVKASRYGGKRSHSQNSEWDLFF 205
EV +QP+ +W K Q RR P QL + C ++ + G Q S+W+
Sbjct: 189 EVNDQPIGSLWSSKHNQCACCRRVEPKSQLVRCRNCNFIAHTGCYGTTLLDQKSDWECDL 248
Query: 204 CI 199
C+
Sbjct: 249 CV 250
Score = 21.9 bits (45), Expect(2) = 0.45
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -3
Query: 503 TCYPKLQWWWWLFPPTSAATTCAES 429
TC KL WW P T ES
Sbjct: 130 TCSTKLGQVWWKSPRTVPGIAMCES 154
>gb|EAA07837.1| agCP1227 [Anopheles gambiae str. PEST]
Length = 164
Score = 35.0 bits (79), Expect = 0.59
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Frame = -1
Query: 544 TFLAPPEVSRLIIKPVIPNYNGGGGYFHPPQLPL-------------HVQRAEHPRHQHR 404
+FL +S ++ V P+ GGGG H P+ PL H+Q++ H QH+
Sbjct: 74 SFLPDSPLSSGLVNSVTPSPLGGGGAVHHPEAPLSNHQHHQHHHPAPHLQQSAHAAPQHQ 133
Query: 403 SQRR-VHNGSQGTTNGQNMEAKDPIAKTQKG 314
Q++ + G + P+ T+ G
Sbjct: 134 QQQQSIRQPHVGMKRKYPTDCPSPMHATRDG 164
>gb|AAL31318.1|L00966_1 ATP/GTP binding site motif A (PROSITE PS00017) amino acid residues
22-29~putative [African swine fever virus]
Length = 348
Score = 34.3 bits (77), Expect = 1.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 533 TTRGVKVNYKTCYPKLQWWWWLFPPTSAATTCAESRAPTP 414
+T G +N C PK +WW W P +A E+ APTP
Sbjct: 311 STAGTLLNTPICEPKNKWWEW--SPNPSAPPEKEASAPTP 348
>ref|XP_133139.3| similar to KIAA1932 protein [Homo sapiens] [Mus musculus]
Length = 801
Score = 34.3 bits (77), Expect = 1.0
Identities = 26/101 (25%), Positives = 39/101 (37%), Gaps = 1/101 (0%)
Frame = -1
Query: 529 PEVSRLIIKPVIPNYNGGGGY-FHPPQLPLHVQRAEHPRHQHRSQRRVHNGSQGTTNGQN 353
P+ + +P +P + Y P QLP A P SQ H+ S G G
Sbjct: 135 PQHQGTLNQPPVPGMDESMAYQASPQQLP-----AAQPPQPSNSQHGTHSLSNGPQPGTA 189
Query: 352 MEAKDPIAKTQKGNSNSSTSKVPPVQVRQGQQIWRQKIP*P 230
+ A G + S P + ++GQQ+W + P P
Sbjct: 190 PSTQHSQAGAPTGQAYGPHSYSEPAKPKKGQQLWTRMKPAP 230
>gb|EAA32866.1| hypothetical protein [Neurospora crassa]
Length = 815
Score = 34.3 bits (77), Expect = 1.0
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 497 YPKLQWWWWLFPPTSAATTCAESRAPTPSTSVAASCSQWKSRNNQWPKYGGKRSNSQN 324
YP QW FP + T + RAP P A S +S+ + P+ + N QN
Sbjct: 684 YPGYQWCGMCFPQLESTTEMEDCRAPVPHHQFALSRFFHESQGKRAPRMCPEHDNEQN 741
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,114,464
Number of Sequences: 1393205
Number of extensions: 11630164
Number of successful extensions: 42829
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 39530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42531
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
