Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000173A_C02 KMC000173A_c02
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563700.1| expressed protein; protein id: At1g04080.1, sup... 114 8e-25
pir||T00964 hypothetical protein F20D22.14 - Arabidopsis thalian... 114 8e-25
sp|P38486|LEG3_CANFA GALECTIN-3 (GALACTOSE-SPECIFIC LECTIN 3) (M... 52 9e-06
gb|AAA16211.1| beta-galactosides-binding lectin 52 9e-06
pir||A49688 lactose-binding lectin L-29 - dog 52 9e-06
>ref|NP_563700.1| expressed protein; protein id: At1g04080.1, supported by cDNA:
3916., supported by cDNA: gi_20259566 [Arabidopsis
thaliana] gi|15810565|gb|AAL07170.1| unknown protein
[Arabidopsis thaliana] gi|20259567|gb|AAM14126.1|
unknown protein [Arabidopsis thaliana]
gi|21593463|gb|AAM65430.1| unknown [Arabidopsis
thaliana]
Length = 768
Score = 114 bits (286), Expect = 8e-25
Identities = 65/118 (55%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Frame = -2
Query: 637 TYSVQSPAQSVMGAYPNAPNQWTN-YGAQPQTWP---AVPQIQGQQWPAGYNQQASYGTY 470
TY+ PAQ V AYPNA QW+ Y AQPQTWP A P Q QQW Y QQA+YG Y
Sbjct: 644 TYNGTPPAQPVSNAYPNAQAQWSGGYAAQPQTWPPAQAAPA-QPQQWNPAYGQQAAYGAY 702
Query: 469 PGYGGNYANPQLPTSVPQNTAAYGAYPP-AYPVQPAVPQQTYVQPVAAPTQQPAAVPA 299
GY Y PQ PT VPQ AAYGAYP YP Q P P AAP QQPAA A
Sbjct: 703 GGYPAGYTAPQAPTPVPQ-AAAYGAYPAQTYPTQSYAPPVAAAAPAAAPVQQPAAAVA 759
>pir||T00964 hypothetical protein F20D22.14 - Arabidopsis thaliana
gi|3142300|gb|AAC16751.1| Contains similarity to
pre-mRNA processing protein PRP39 gb|L29224 from S.
cerevisiae. ESTs gb|R64908 and gb|T88158, gb|N38703 and
gb|AA651043 come from this gene. [Arabidopsis thaliana]
Length = 1345
Score = 114 bits (286), Expect = 8e-25
Identities = 65/118 (55%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Frame = -2
Query: 637 TYSVQSPAQSVMGAYPNAPNQWTN-YGAQPQTWP---AVPQIQGQQWPAGYNQQASYGTY 470
TY+ PAQ V AYPNA QW+ Y AQPQTWP A P Q QQW Y QQA+YG Y
Sbjct: 644 TYNGTPPAQPVSNAYPNAQAQWSGGYAAQPQTWPPAQAAPA-QPQQWNPAYGQQAAYGAY 702
Query: 469 PGYGGNYANPQLPTSVPQNTAAYGAYPP-AYPVQPAVPQQTYVQPVAAPTQQPAAVPA 299
GY Y PQ PT VPQ AAYGAYP YP Q P P AAP QQPAA A
Sbjct: 703 GGYPAGYTAPQAPTPVPQ-AAAYGAYPAQTYPTQSYAPPVAAAAPAAAPVQQPAAAVA 759
>sp|P38486|LEG3_CANFA GALECTIN-3 (GALACTOSE-SPECIFIC LECTIN 3) (MAC-2 ANTIGEN)
(IGE-BINDING PROTEIN) (35 KD LECTIN) (CARBOHYDRATE
BINDING PROTEIN 35) (CBP 35) (LAMININ-BINDING PROTEIN)
(LECTIN L-29)
Length = 296
Score = 51.6 bits (122), Expect = 9e-06
Identities = 42/112 (37%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = -2
Query: 619 PAQSVMGAYPN-APNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPG-YGGNYA 446
P Q+ G YP AP A P +P GQ P GY QA GTYPG Y
Sbjct: 64 PGQAPPGGYPGQAPPGGYPGQAPPGGYP------GQAPPGGYPGQAPPGTYPGPTAPAYP 117
Query: 445 NPQLPTSVPQNTAAYGAYPPAYPVQPAVPQQTYVQPVAAPTQQPAAVPAGLL 290
P P + P + GAYPP P QP+ P A P P +PAG L
Sbjct: 118 GPTAPGTQPGQPSGPGAYPP--PGQPSAPG-------AYPAAGPFGIPAGPL 160
Score = 38.9 bits (89), Expect = 0.058
Identities = 43/133 (32%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Frame = -2
Query: 619 PAQSVMGAYPNAPNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPGYG--GNYA 446
P S GAYP A P +P GQ P GY QA G YPG G Y
Sbjct: 37 PGASYPGAYPGQ--------APPGGYP------GQAPPGGYPGQAPPGGYPGQAPPGGYP 82
Query: 445 NPQLPTSVP--------QNTAAYGAYP----PAYP------VQPAVPQQTYVQP----VA 332
P P A G YP PAYP QP P P +
Sbjct: 83 GQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPGTQPGQPSGPGAYPPPGQPS 142
Query: 331 APTQQPAAVPAGL 293
AP PAA P G+
Sbjct: 143 APGAYPAAGPFGI 155
>gb|AAA16211.1| beta-galactosides-binding lectin
Length = 285
Score = 51.6 bits (122), Expect = 9e-06
Identities = 42/112 (37%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = -2
Query: 619 PAQSVMGAYPN-APNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPG-YGGNYA 446
P Q+ G YP AP A P +P GQ P GY QA GTYPG Y
Sbjct: 53 PGQAPPGGYPGQAPPGGYPGQAPPGGYP------GQAPPGGYPGQAPPGTYPGPTAPAYP 106
Query: 445 NPQLPTSVPQNTAAYGAYPPAYPVQPAVPQQTYVQPVAAPTQQPAAVPAGLL 290
P P + P + GAYPP P QP+ P A P P +PAG L
Sbjct: 107 GPTAPGTQPGQPSGPGAYPP--PGQPSAPG-------AYPAAGPFGIPAGPL 149
Score = 38.9 bits (89), Expect = 0.058
Identities = 43/133 (32%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Frame = -2
Query: 619 PAQSVMGAYPNAPNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPGYG--GNYA 446
P S GAYP A P +P GQ P GY QA G YPG G Y
Sbjct: 26 PGASYPGAYPGQ--------APPGGYP------GQAPPGGYPGQAPPGGYPGQAPPGGYP 71
Query: 445 NPQLPTSVP--------QNTAAYGAYP----PAYP------VQPAVPQQTYVQP----VA 332
P P A G YP PAYP QP P P +
Sbjct: 72 GQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPGTQPGQPSGPGAYPPPGQPS 131
Query: 331 APTQQPAAVPAGL 293
AP PAA P G+
Sbjct: 132 APGAYPAAGPFGI 144
>pir||A49688 lactose-binding lectin L-29 - dog
Length = 294
Score = 51.6 bits (122), Expect = 9e-06
Identities = 42/112 (37%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = -2
Query: 619 PAQSVMGAYPN-APNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPG-YGGNYA 446
P Q+ G YP AP A P +P GQ P GY QA GTYPG Y
Sbjct: 62 PGQAPPGGYPGQAPPGGYPGQAPPGGYP------GQAPPGGYPGQAPPGTYPGPTAPAYP 115
Query: 445 NPQLPTSVPQNTAAYGAYPPAYPVQPAVPQQTYVQPVAAPTQQPAAVPAGLL 290
P P + P + GAYPP P QP+ P A P P +PAG L
Sbjct: 116 GPTAPGTQPGQPSGPGAYPP--PGQPSAPG-------AYPAAGPFGIPAGPL 158
Score = 38.9 bits (89), Expect = 0.058
Identities = 43/133 (32%), Positives = 46/133 (34%), Gaps = 24/133 (18%)
Frame = -2
Query: 619 PAQSVMGAYPNAPNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQASYGTYPGYG--GNYA 446
P S GAYP A P +P GQ P GY QA G YPG G Y
Sbjct: 35 PGASYPGAYPGQ--------APPGGYP------GQAPPGGYPGQAPPGGYPGQAPPGGYP 80
Query: 445 NPQLPTSVP--------QNTAAYGAYP----PAYP------VQPAVPQQTYVQP----VA 332
P P A G YP PAYP QP P P +
Sbjct: 81 GQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPGTQPGQPSGPGAYPPPGQPS 140
Query: 331 APTQQPAAVPAGL 293
AP PAA P G+
Sbjct: 141 APGAYPAAGPFGI 153
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,326,286
Number of Sequences: 1393205
Number of extensions: 13695125
Number of successful extensions: 56035
Number of sequences better than 10.0: 730
Number of HSP's better than 10.0 without gapping: 47272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54146
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
