Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000170A_C03 KMC000170A_c03
(1136 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T49187 hypothetical protein MAA21.90 - Arabidopsis thaliana... 238 2e-61
ref|NP_191905.2| conserved hypothetical protein; protein id: At3... 238 2e-61
dbj|BAC16134.1| putative Sec31p [Oryza sativa (japonica cultivar... 208 6e-53
dbj|BAB47154.1| Sec31p [Oryza sativa] 208 6e-53
ref|NP_173317.1| hypothetical protein; protein id: At1g18830.1 [... 179 9e-44
>pir||T49187 hypothetical protein MAA21.90 - Arabidopsis thaliana
gi|7573329|emb|CAB87799.1| putative protein [Arabidopsis
thaliana]
Length = 1097
Score = 238 bits (606), Expect = 2e-61
Identities = 123/187 (65%), Positives = 144/187 (76%), Gaps = 4/187 (2%)
Frame = -3
Query: 1059 PLAPTQMNLGQVQN--LSQVVAPTPNPMGFMPISSSGGVQRPMQPPSPPQAQPV-QPAAA 889
P P+Q LGQ N + QVVAP P+GF P+++ G R +QP SPP Q Q A A
Sbjct: 913 PSGPSQ--LGQYPNPKMPQVVAPAAGPIGFTPMATPGVAPRSVQPASPPTQQAAAQAAPA 970
Query: 888 PAAPPATVQTADTSKVPGHQKPIVSTWTRLFNETSEALGGSRANPAKRREIEDNSKRIGG 709
PA PP TVQTADTS VP HQKP+++T TRLFNETSEALGG+RAN K+REIEDNS+++G
Sbjct: 971 PATPPPTVQTADTSNVPAHQKPVIATLTRLFNETSEALGGARANTTKKREIEDNSRKLGA 1030
Query: 708 LFAKLNSGDISKNAADKLLQLCQSLDSGDFGTALQIQVLLTTTEWDECQSWLGSLKR-MI 532
LF KLNSGDISKNAADKL QLCQ+LD+ DF TALQIQVLLTT+EWDEC WL +LKR M+
Sbjct: 1031 LFVKLNSGDISKNAADKLAQLCQALDNNDFSTALQIQVLLTTSEWDECNFWLATLKRMMV 1090
Query: 531 KTRQSVR 511
K RQ+VR
Sbjct: 1091 KARQNVR 1097
>ref|NP_191905.2| conserved hypothetical protein; protein id: At3g63460.1, supported by
cDNA: gi_20466471 [Arabidopsis thaliana]
gi|20466472|gb|AAM20553.1| putative protein [Arabidopsis
thaliana]
Length = 1104
Score = 238 bits (606), Expect = 2e-61
Identities = 123/187 (65%), Positives = 144/187 (76%), Gaps = 4/187 (2%)
Frame = -3
Query: 1059 PLAPTQMNLGQVQN--LSQVVAPTPNPMGFMPISSSGGVQRPMQPPSPPQAQPV-QPAAA 889
P P+Q LGQ N + QVVAP P+GF P+++ G R +QP SPP Q Q A A
Sbjct: 920 PSGPSQ--LGQYPNPKMPQVVAPAAGPIGFTPMATPGVAPRSVQPASPPTQQAAAQAAPA 977
Query: 888 PAAPPATVQTADTSKVPGHQKPIVSTWTRLFNETSEALGGSRANPAKRREIEDNSKRIGG 709
PA PP TVQTADTS VP HQKP+++T TRLFNETSEALGG+RAN K+REIEDNS+++G
Sbjct: 978 PATPPPTVQTADTSNVPAHQKPVIATLTRLFNETSEALGGARANTTKKREIEDNSRKLGA 1037
Query: 708 LFAKLNSGDISKNAADKLLQLCQSLDSGDFGTALQIQVLLTTTEWDECQSWLGSLKR-MI 532
LF KLNSGDISKNAADKL QLCQ+LD+ DF TALQIQVLLTT+EWDEC WL +LKR M+
Sbjct: 1038 LFVKLNSGDISKNAADKLAQLCQALDNNDFSTALQIQVLLTTSEWDECNFWLATLKRMMV 1097
Query: 531 KTRQSVR 511
K RQ+VR
Sbjct: 1098 KARQNVR 1104
>dbj|BAC16134.1| putative Sec31p [Oryza sativa (japonica cultivar-group)]
Length = 1025
Score = 208 bits (529), Expect(2) = 6e-53
Identities = 115/200 (57%), Positives = 142/200 (70%), Gaps = 7/200 (3%)
Frame = -3
Query: 1086 PPIIHTSRQP-LAPTQMNLGQVQNLSQVVAPTPNPMG-FMPISSSGGVQRP----MQPPS 925
PP + ++ P P+QM G V N NP FMP ++ G VQRP +QP S
Sbjct: 838 PPAVSSATVPGTTPSQMFPGPVAN---------NPTSRFMPSNNPGFVQRPGLSPVQPSS 888
Query: 924 PPQAQ-PVQPAAAPAAPPATVQTADTSKVPGHQKPIVSTWTRLFNETSEALGGSRANPAK 748
P QAQ QP AP APPATVQTADTSKV KP+++T TRLF+ETS+A+GGS+ K
Sbjct: 889 PTQAQGQPQPVVAPPAPPATVQTADTSKVSAELKPVIATLTRLFDETSKAMGGSQV---K 945
Query: 747 RREIEDNSKRIGGLFAKLNSGDISKNAADKLLQLCQSLDSGDFGTALQIQVLLTTTEWDE 568
+REIEDNS++IG LFAKLNSGDIS N + KL+QLC +LDSGDF TA+ +QVLLTT++WDE
Sbjct: 946 KREIEDNSRKIGTLFAKLNSGDISPNVSSKLIQLCSALDSGDFATAMHLQVLLTTSDWDE 1005
Query: 567 CQSWLGSLKRMIKTRQSVRL 508
C WL +LKRMIKTRQ+ R+
Sbjct: 1006 CNFWLAALKRMIKTRQNFRM 1025
Score = 23.1 bits (48), Expect(2) = 6e-53
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 1133 EKYQQPRLGSQ 1101
E+YQQP LGSQ
Sbjct: 787 EQYQQPTLGSQ 797
>dbj|BAB47154.1| Sec31p [Oryza sativa]
Length = 1023
Score = 208 bits (529), Expect(2) = 6e-53
Identities = 115/200 (57%), Positives = 142/200 (70%), Gaps = 7/200 (3%)
Frame = -3
Query: 1086 PPIIHTSRQP-LAPTQMNLGQVQNLSQVVAPTPNPMG-FMPISSSGGVQRP----MQPPS 925
PP + ++ P P+QM G V N NP FMP ++ G VQRP +QP S
Sbjct: 836 PPAVSSATVPGTTPSQMFPGPVAN---------NPTSRFMPSNNPGFVQRPGLSPVQPSS 886
Query: 924 PPQAQ-PVQPAAAPAAPPATVQTADTSKVPGHQKPIVSTWTRLFNETSEALGGSRANPAK 748
P QAQ QP AP APPATVQTADTSKV KP+++T TRLF+ETS+A+GGS+ K
Sbjct: 887 PTQAQGQPQPVVAPPAPPATVQTADTSKVSAELKPVIATLTRLFDETSKAMGGSQV---K 943
Query: 747 RREIEDNSKRIGGLFAKLNSGDISKNAADKLLQLCQSLDSGDFGTALQIQVLLTTTEWDE 568
+REIEDNS++IG LFAKLNSGDIS N + KL+QLC +LDSGDF TA+ +QVLLTT++WDE
Sbjct: 944 KREIEDNSRKIGTLFAKLNSGDISPNVSSKLIQLCSALDSGDFATAMHLQVLLTTSDWDE 1003
Query: 567 CQSWLGSLKRMIKTRQSVRL 508
C WL +LKRMIKTRQ+ R+
Sbjct: 1004 CNFWLAALKRMIKTRQNFRM 1023
Score = 23.1 bits (48), Expect(2) = 6e-53
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1
Query: 1133 EKYQQPRLGSQ 1101
E+YQQP LGSQ
Sbjct: 785 EQYQQPTLGSQ 795
>ref|NP_173317.1| hypothetical protein; protein id: At1g18830.1 [Arabidopsis thaliana]
Length = 911
Score = 179 bits (453), Expect = 9e-44
Identities = 101/174 (58%), Positives = 121/174 (69%), Gaps = 13/174 (7%)
Frame = -3
Query: 993 PNPMGFMPISSSGG----------VQRPMQPPSPPQAQPVQPAAAPAAPPATVQTADTSK 844
P P + I S G V P++P +P VQP P APP TVQTADTS
Sbjct: 740 PGPGSYRSIHSQVGPYINSKIPQTVAPPVRPMTPTHQVAVQPE--PVAPPPTVQTADTSN 797
Query: 843 VPGHQKPIVSTWTRLFNETSEALGG-SRANPAKRREIEDN-SKRIGGLFAKLNSGDISKN 670
VP HQKPIV++ TRLF ET E L G SR PAK+RE EDN S+++G LF+KLN+GDISKN
Sbjct: 798 VPAHQKPIVASLTRLFKETFEPLRGYSRDTPAKKREAEDNCSRKLGALFSKLNNGDISKN 857
Query: 669 AADKLLQLCQSLDSGDFGTALQIQVLLTTTEWDECQSWLGSLKRMIKT-RQSVR 511
AA+KL QLCQ+LD DFG AL+IQ L+T+TEWDEC SWL +LK+MI T RQ+VR
Sbjct: 858 AAEKLTQLCQALDKRDFGAALKIQGLMTSTEWDECSSWLPTLKKMIVTGRQNVR 911
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 983,805,126
Number of Sequences: 1393205
Number of extensions: 22684053
Number of successful extensions: 117992
Number of sequences better than 10.0: 803
Number of HSP's better than 10.0 without gapping: 79710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105073
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 69458271366
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
