Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000169A_C01 KMC000169A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_326310.1| predicted coding region [Mycoplasma pulmonis] g... 34 1.2
gb|AAL78926.1|AF447494_1 BRCA1 [Nycteris grandis] 32 5.7
>ref|NP_326310.1| predicted coding region [Mycoplasma pulmonis]
gi|25393725|pir||G90571 hypothetical protein MYPU_4790
[imported] - Mycoplasma pulmonis (strain UAB CTIP)
gi|14089893|emb|CAC13652.1| predicted coding region
[Mycoplasma pulmonis]
Length = 804
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = -3
Query: 474 ISDNQLYLNIESLF*LLSYWNRRAD*IITFFLNIKRQSDSWIQLFQALNYK 322
ISD++LY I+ F LL W + F+ NIK + ++W++ F N+K
Sbjct: 513 ISDDKLYNKIDLRFFLLEQWAKTKK---IFYGNIKEEINNWLKFFIDQNFK 560
>gb|AAL78926.1|AF447494_1 BRCA1 [Nycteris grandis]
Length = 878
Score = 32.0 bits (71), Expect = 5.7
Identities = 14/47 (29%), Positives = 26/47 (54%)
Frame = +3
Query: 219 SSQLQF*VHKNPGHPIEELANIMYMYEQNPDVFIPYNLKPEKAESRN 359
S + F + NPG+P E+ A+ + +Q+P+V + Y K + E +
Sbjct: 565 SKRQSFALFSNPGNPEEDCAHFRSLRKQSPEVTLEYEQKETQGEKES 611
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,450,453
Number of Sequences: 1393205
Number of extensions: 9089155
Number of successful extensions: 17141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17140
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
