Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000168A_C01 KMC000168A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197204.1| Exportin1 (XPO1) protein; protein id: At5g17020... 70 2e-11
ref|NP_566193.1| putative exportin1 (XPO1) protein; protein id: ... 64 2e-09
gb|AAF26113.1|AC012328_16 putative exportin1 (XPO1) protein [Ara... 64 2e-09
emb|CAC39223.1| exportin 1b [Arabidopsis thaliana] 64 2e-09
gb|AAK56267.1|AF367278_1 AT3g03110/T17B22_20 [Arabidopsis thalia... 64 2e-09
>ref|NP_197204.1| Exportin1 (XPO1) protein; protein id: At5g17020.1, supported by cDNA:
gi_15810122, supported by cDNA: gi_20465600 [Arabidopsis
thaliana] gi|11357286|pir||T51557 Exportin1 (XPO1)
protein - Arabidopsis thaliana (fragment)
gi|25347852|pir||T52638 exportin 1 [validated] -
Arabidopsis thaliana gi|5931694|emb|CAB56597.1| Exportin1
(XPO1) protein [Arabidopsis thaliana]
gi|7671510|emb|CAB89280.1| Exportin1 (XPO1) protein
[Arabidopsis thaliana] gi|9755703|emb|CAC01715.1|
Exportin1 (XPO1) protein [Arabidopsis thaliana]
gi|15810123|gb|AAL07205.1| putative exportin1 protein
XPO1 [Arabidopsis thaliana] gi|20465601|gb|AAM20283.1|
putative Exportin1 (XPO1) protein [Arabidopsis thaliana]
Length = 1075
Score = 70.5 bits (171), Expect = 2e-11
Identities = 34/37 (91%), Positives = 36/37 (96%)
Frame = -2
Query: 678 DLYAEEAAAQRERERPRMLAIPGLIAPNELQDEMVDS 568
DLYAEEAAAQRERER RML+IPGLIAPNE+QDEMVDS
Sbjct: 1039 DLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1075
>ref|NP_566193.1| putative exportin1 (XPO1) protein; protein id: At3g03110.1
[Arabidopsis thaliana]
Length = 1067
Score = 63.5 bits (153), Expect = 2e-09
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = -2
Query: 678 DLYAEEAAAQRERERPRMLAIPGLIAPNELQDEMVDS 568
DLYAEEAAAQ ERER RML+IPGLIAP+E+QD+M DS
Sbjct: 1031 DLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 1067
>gb|AAF26113.1|AC012328_16 putative exportin1 (XPO1) protein [Arabidopsis thaliana]
Length = 1022
Score = 63.5 bits (153), Expect = 2e-09
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = -2
Query: 678 DLYAEEAAAQRERERPRMLAIPGLIAPNELQDEMVDS 568
DLYAEEAAAQ ERER RML+IPGLIAP+E+QD+M DS
Sbjct: 986 DLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 1022
>emb|CAC39223.1| exportin 1b [Arabidopsis thaliana]
Length = 1076
Score = 63.5 bits (153), Expect = 2e-09
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = -2
Query: 678 DLYAEEAAAQRERERPRMLAIPGLIAPNELQDEMVDS 568
DLYAEEAAAQ ERER RML+IPGLIAP+E+QD+M DS
Sbjct: 1040 DLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 1076
>gb|AAK56267.1|AF367278_1 AT3g03110/T17B22_20 [Arabidopsis thaliana]
gi|28416447|gb|AAO42754.1| At3g03110/T17B22_20
[Arabidopsis thaliana]
Length = 356
Score = 63.5 bits (153), Expect = 2e-09
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = -2
Query: 678 DLYAEEAAAQRERERPRMLAIPGLIAPNELQDEMVDS 568
DLYAEEAAAQ ERER RML+IPGLIAP+E+QD+M DS
Sbjct: 320 DLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,262,412
Number of Sequences: 1393205
Number of extensions: 12078092
Number of successful extensions: 20181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20180
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
