Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000167A_C01 KMC000167A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86206 hypothetical protein [imported] - Arabidopsis thalia... 96 4e-19
ref|NP_563783.1| expressed protein; protein id: At1g07180.1, sup... 96 4e-19
gb|AAM61225.1| putative NADH dehydrogenase (ubiquinone oxidoredu... 96 4e-19
ref|NP_180560.1| putative NADH dehydrogenase (ubiquinone oxidore... 94 2e-18
dbj|BAB68119.1| putative NADH dehydrogenase [Oryza sativa (japon... 92 6e-18
>pir||H86206 hypothetical protein [imported] - Arabidopsis thaliana
gi|8954028|gb|AAF82202.1|AC067971_10 Strong similarity
to an unknown protein F23F1.9 gi|7432659 from
Arabidopsis thaliana BAC F23F1 gb|AC004680. It contains
a pyridine nucleotide-disulphide oxidoreductase domain
PF|00070. EST gb|AI997290 comes from this gene
Length = 512
Score = 95.9 bits (237), Expect = 4e-19
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = -3
Query: 632 EGKGIALPGFVSCFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI 483
EGKGI++ GF+S FIWRSAYLTRV+SWRNRFYVAINW TTFVFGRDISRI
Sbjct: 463 EGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISRI 512
>ref|NP_563783.1| expressed protein; protein id: At1g07180.1, supported by cDNA:
114420. [Arabidopsis thaliana]
gi|26452964|dbj|BAC43558.1| unknown protein [Arabidopsis
thaliana] gi|28973319|gb|AAO63984.1| unknown protein
[Arabidopsis thaliana]
Length = 510
Score = 95.9 bits (237), Expect = 4e-19
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = -3
Query: 632 EGKGIALPGFVSCFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI 483
EGKGI++ GF+S FIWRSAYLTRV+SWRNRFYVAINW TTFVFGRDISRI
Sbjct: 461 EGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISRI 510
>gb|AAM61225.1| putative NADH dehydrogenase (ubiquinone oxidoreductase)
[Arabidopsis thaliana]
Length = 510
Score = 95.9 bits (237), Expect = 4e-19
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = -3
Query: 632 EGKGIALPGFVSCFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI 483
EGKGI++ GF+S FIWRSAYLTRV+SWRNRFYVAINW TTFVFGRDISRI
Sbjct: 461 EGKGISMAGFLSWFIWRSAYLTRVVSWRNRFYVAINWLTTFVFGRDISRI 510
>ref|NP_180560.1| putative NADH dehydrogenase (ubiquinone oxidoreductase); protein
id: At2g29990.1 [Arabidopsis thaliana]
gi|7432659|pir||T02486 hypothetical protein At2g29990
[imported] - Arabidopsis thaliana
gi|3420052|gb|AAC31853.1| putative NADH dehydrogenase
(ubiquinone oxidoreductase) [Arabidopsis thaliana]
Length = 508
Score = 93.6 bits (231), Expect = 2e-18
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = -3
Query: 632 EGKGIALPGFVSCFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI 483
+ KGI++ GFVS FIWRSAYLTRVISWRNRFYVAINW TTFVFGRDISRI
Sbjct: 459 DAKGISMTGFVSWFIWRSAYLTRVISWRNRFYVAINWFTTFVFGRDISRI 508
>dbj|BAB68119.1| putative NADH dehydrogenase [Oryza sativa (japonica
cultivar-group)] gi|20160642|dbj|BAB89587.1| putative
NADH dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 499
Score = 92.0 bits (227), Expect = 6e-18
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = -3
Query: 632 EGKGIALPGFVSCFIWRSAYLTRVISWRNRFYVAINWATTFVFGRDISRI 483
E KGI+L GFVS FIWRSAYLTRV+SWRNRFYVAINW TT +FGRDISRI
Sbjct: 450 ESKGISLAGFVSWFIWRSAYLTRVVSWRNRFYVAINWLTTLLFGRDISRI 499
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,569,457
Number of Sequences: 1393205
Number of extensions: 12071282
Number of successful extensions: 27810
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 26809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27803
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
