Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000166A_C01 KMC000166A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN60363.1| unknown [Arabidopsis thaliana] 43 0.003
ref|NP_200160.1| importin beta; protein id: At5g53480.1 [Arabido... 43 0.003
dbj|BAA34862.1| importin-beta2 [Oryza sativa (japonica cultivar-... 43 0.003
ref|XP_163591.1| hypothetical protein XP_163591 [Mus musculus] 33 2.6
ref|NP_651425.1| CG17197-PA [Drosophila melanogaster] gi|7301376... 33 3.4
>gb|AAN60363.1| unknown [Arabidopsis thaliana]
Length = 146
Score = 43.1 bits (100), Expect = 0.003
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -3
Query: 658 DCLSSDDHLVKESAEWAKLAISRAI 584
+CLSS+DH +KE+AEWAK AI+RAI
Sbjct: 120 ECLSSEDHTIKEAAEWAKHAITRAI 144
>ref|NP_200160.1| importin beta; protein id: At5g53480.1 [Arabidopsis thaliana]
gi|9759187|dbj|BAB09724.1| importin beta [Arabidopsis
thaliana]
Length = 870
Score = 43.1 bits (100), Expect = 0.003
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -3
Query: 658 DCLSSDDHLVKESAEWAKLAISRAI 584
+CLSS+DH +KE+AEWAK AI+RAI
Sbjct: 844 ECLSSEDHTIKEAAEWAKHAITRAI 868
>dbj|BAA34862.1| importin-beta2 [Oryza sativa (japonica cultivar-group)]
Length = 872
Score = 43.1 bits (100), Expect = 0.003
Identities = 18/25 (72%), Positives = 24/25 (96%)
Frame = -3
Query: 658 DCLSSDDHLVKESAEWAKLAISRAI 584
+CL+SDD LVKESA+WA++AISRA+
Sbjct: 846 ECLASDDPLVKESADWARVAISRAV 870
>ref|XP_163591.1| hypothetical protein XP_163591 [Mus musculus]
Length = 403
Score = 33.5 bits (75), Expect = 2.6
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = +1
Query: 292 SSCIKEPNLFCQVSRKMGHHPRTTSTAMQKNKLEKEKYEKDDSMLV 429
S+CI +P+L +++K+ H PR + + K+E + +KD+ L+
Sbjct: 327 STCISKPDLDHSLAQKLAHRPRFSHRMKTEKKMEAVRRKKDNLHLI 372
>ref|NP_651425.1| CG17197-PA [Drosophila melanogaster] gi|7301376|gb|AAF56503.1|
CG17197-PA [Drosophila melanogaster]
Length = 316
Score = 33.1 bits (74), Expect = 3.4
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Frame = -2
Query: 548 SLHTSICICCL---------GVSTACHESGHHQFWAQVFRSFWLSAFQVTNMESSFSYFS 396
S H +C CC+ S H + + FW +F + T++ ++ YFS
Sbjct: 118 SWHCILCKCCILKRDRHCIFTASCVGHNNQRYFFWFTLFMALGTGVALATHIIATLKYFS 177
Query: 395 FSNLFF 378
+S+L F
Sbjct: 178 YSDLIF 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 636,722,640
Number of Sequences: 1393205
Number of extensions: 15015077
Number of successful extensions: 35137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35041
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
