Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000164A_C02 KMC000164A_c02
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44032.1| snakin-1 [Solanum tuberosum] 123 1e-27
ref|NP_568914.1| Expressed protein; protein id: At5g59845.1, sup... 111 6e-24
ref|NP_179096.1| similar to gibberellin-regulated proteins; prot... 110 1e-23
dbj|BAB08352.1| contains similarity to gibberellin-stimulated tr... 110 1e-23
ref|NP_181486.1| similar to gibberellin-regulated proteins; prot... 106 2e-22
>emb|CAC44032.1| snakin-1 [Solanum tuberosum]
Length = 88
Score = 123 bits (309), Expect = 1e-27
Identities = 49/62 (79%), Positives = 54/62 (87%)
Frame = -1
Query: 458 SGFCGSKCAQRCSKAGMQDRCIRFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPK 279
S FC SKC RCSKAG+ DRC+++CGICC +CKCVPSGTYGNKHECPCYRD KNSKGK K
Sbjct: 27 SSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSK 86
Query: 278 CP 273
CP
Sbjct: 87 CP 88
>ref|NP_568914.1| Expressed protein; protein id: At5g59845.1, supported by cDNA:
11699. [Arabidopsis thaliana] gi|21536988|gb|AAM61329.1|
contains similarity to gibberellin-stimulated transcript
1 like protein [Arabidopsis thaliana]
gi|26451393|dbj|BAC42796.1| unknown protein [Arabidopsis
thaliana]
Length = 89
Score = 111 bits (278), Expect = 6e-24
Identities = 47/64 (73%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Frame = -1
Query: 461 ESGFCGSKCAQRCSKAGMQDRCIRFCGICCGKCK-CVPSGTYGNKHECPCYRDMKNSKGK 285
+S CG KC RCSKAG QDRC+++C ICC KC CVPSGTYGNK ECPCYRDMKNSKG
Sbjct: 26 DSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGT 85
Query: 284 PKCP 273
KCP
Sbjct: 86 SKCP 89
>ref|NP_179096.1| similar to gibberellin-regulated proteins; protein id: At2g14900.1
[Arabidopsis thaliana] gi|25313151|pir||G84522 similar
to gibberellin-regulated proteins [imported] -
Arabidopsis thaliana gi|3650032|gb|AAC61287.1| similar
to gibberellin-regulated proteins [Arabidopsis thaliana]
gi|27754546|gb|AAO22720.1| putative
gibberellin-regulated protein [Arabidopsis thaliana]
gi|28394019|gb|AAO42417.1| putative
gibberellin-regulated protein [Arabidopsis thaliana]
Length = 108
Score = 110 bits (276), Expect = 1e-23
Identities = 42/60 (70%), Positives = 50/60 (83%)
Frame = -1
Query: 452 FCGSKCAQRCSKAGMQDRCIRFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 273
+CG KC RC +AGM+DRC+++CGICC C+CVPSGTYGNKHEC CYRD +SKG PKCP
Sbjct: 49 WCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108
>dbj|BAB08352.1| contains similarity to gibberellin-stimulated transcript 1 like
protein~gene_id:MMN10.7 [Arabidopsis thaliana]
Length = 88
Score = 110 bits (276), Expect = 1e-23
Identities = 46/60 (76%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Frame = -1
Query: 449 CGSKCAQRCSKAGMQDRCIRFCGICCGKCK-CVPSGTYGNKHECPCYRDMKNSKGKPKCP 273
CG KC RCSKAG QDRC+++C ICC KC CVPSGTYGNK ECPCYRDMKNSKG KCP
Sbjct: 29 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 88
>ref|NP_181486.1| similar to gibberellin-regulated proteins; protein id: At2g39540.1
[Arabidopsis thaliana] gi|7447291|pir||T00564
gibberellin-regulated protein homolog F12L6.20 -
Arabidopsis thaliana gi|3355483|gb|AAC27845.1| similar
to gibberellin-regulated proteins [Arabidopsis thaliana]
Length = 87
Score = 106 bits (265), Expect = 2e-22
Identities = 41/59 (69%), Positives = 47/59 (79%)
Frame = -1
Query: 449 CGSKCAQRCSKAGMQDRCIRFCGICCGKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 273
CG KC RCSKAG + C+++C ICC KC CVPSGT+G+K ECPCYRDMKNSKG KCP
Sbjct: 29 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,566,413
Number of Sequences: 1393205
Number of extensions: 11685884
Number of successful extensions: 28979
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 26934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28847
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
