Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000162A_C01 KMC000162A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187304.1| hypothetical protein; protein id: At3g06520.1 [... 67 2e-10
pir||C86226 protein T31J12.4 [imported] - Arabidopsis thaliana g... 65 4e-10
ref|NP_172403.1| unknown protein; protein id: At1g09320.1 [Arabi... 65 4e-10
ref|NP_172123.1| hypothetical protein; protein id: At1g06340.1 [... 62 3e-09
ref|NP_182245.1| unknown protein; protein id: At2g47230.1 [Arabi... 48 6e-05
>ref|NP_187304.1| hypothetical protein; protein id: At3g06520.1 [Arabidopsis
thaliana] gi|12322681|gb|AAG51333.1|AC020580_13
hypothetical protein; 66083-64412 [Arabidopsis thaliana]
Length = 466
Score = 66.6 bits (161), Expect = 2e-10
Identities = 34/96 (35%), Positives = 57/96 (58%), Gaps = 1/96 (1%)
Frame = -2
Query: 505 TLIVDEETKIPLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWWYGKIIGLTGV 326
TL D+E ++ LKE D+RP PP + +G YE+Y+ V+ + N+GWW G++ +
Sbjct: 372 TLKTDDEREL-LKEEARGSDIRPPPPPLIPKGYRYELYELVDAWYNEGWWSGRVYKINNN 430
Query: 325 KGYY-VYFSSTNETLPYHCSRLRVHHDFIHGDWHQI 221
K Y VYF +T+E+L + + LR + +G W ++
Sbjct: 431 KTRYGVYFQTTDESLEFAYNDLRPCQVWRNGKWSRV 466
Score = 53.9 bits (128), Expect = 1e-06
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = -2
Query: 493 DEETKIPLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWW---YGKIIGLTGVK 323
D+ IPL++ V KD+RPVPP + YE V+ + N WW K++G G
Sbjct: 212 DDGESIPLRDVVEAKDIRPVPPSELSPVVCYEPGVIVDAWFNKRWWTSRVSKVLG-GGSN 270
Query: 322 GYYVYFSSTNETLPYHCSRLRVHHDFIHGDW 230
Y V+ ST E LR H D+I+G W
Sbjct: 271 KYSVFIISTGEETTILNFNLRPHKDWINGQW 301
Score = 38.5 bits (88), Expect = 0.045
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 3/95 (3%)
Frame = -2
Query: 505 TLIVDEETKIPLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVF-DNDGWWY-GKIIGLT 332
+L V + +KE V P LRP PP R ++ V+VF D++G W G + +
Sbjct: 47 SLTVGGSVSVRMKEYVTPTRLRPSPP--RELNRRFKADDEVDVFRDSEGCWVRGNVTTVL 104
Query: 331 GVKGYYVYFSSTNE-TLPYHCSRLRVHHDFIHGDW 230
Y V F N + LR+H +++ G W
Sbjct: 105 EDSRYIVEFKGENRPEIEVDQFNLRLHREWLDGGW 139
>pir||C86226 protein T31J12.4 [imported] - Arabidopsis thaliana
gi|4337176|gb|AAD18097.1| T31J12.4 [Arabidopsis
thaliana]
Length = 514
Score = 65.1 bits (157), Expect = 4e-10
Identities = 33/87 (37%), Positives = 46/87 (51%)
Frame = -2
Query: 490 EETKIPLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWWYGKIIGLTGVKGYYV 311
E+ K PL+E V +RP+P +E + VN NDGWW G I + Y V
Sbjct: 421 EDGKEPLREEVNVSRIRPLP-LESVMVSPFERHDKVNALYNDGWWVGVIRKVLAKSSYLV 479
Query: 310 YFSSTNETLPYHCSRLRVHHDFIHGDW 230
F +T E L +H S+LR+H ++I G W
Sbjct: 480 LFKNTQELLKFHHSQLRLHQEWIDGKW 506
Score = 54.7 bits (130), Expect = 6e-07
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = -2
Query: 505 TLIVDEETKIPLKETVLPKDLRPVPPCVRT--RGGHYEMYQAVNVFDNDGWWYGKIIGLT 332
TL D+E PLKE V LRP P + + + + V+ F NDGWW G + +
Sbjct: 58 TLFFDKEGTKPLKEVVDMSQLRPPAPPMSEIEKKKKIVVGEEVDAFYNDGWWEGDVTEVL 117
Query: 331 GVKGYYVYFSSTNETLPYHCSRLRVHHDFIHGDW 230
+ V+F S+ E + + LR H +++ G W
Sbjct: 118 DDGKFSVFFRSSKEQIRFRKDELRFHREWVDGAW 151
Score = 50.8 bits (120), Expect = 9e-06
Identities = 27/82 (32%), Positives = 39/82 (46%)
Frame = -2
Query: 475 PLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWWYGKIIGLTGVKGYYVYFSST 296
PLKE +RP PP R + + +N F NDGWW G +I +YF +
Sbjct: 267 PLKEETDFLHIRPPPP--RDEDIDFAVGDKINAFYNDGWWVGVVIDGMKHGTVGIYFRQS 324
Query: 295 NETLPYHCSRLRVHHDFIHGDW 230
E + + LR+H D++ G W
Sbjct: 325 QEKMRFGRQGLRLHKDWVDGTW 346
>ref|NP_172403.1| unknown protein; protein id: At1g09320.1 [Arabidopsis thaliana]
Length = 491
Score = 65.1 bits (157), Expect = 4e-10
Identities = 33/87 (37%), Positives = 46/87 (51%)
Frame = -2
Query: 490 EETKIPLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWWYGKIIGLTGVKGYYV 311
E+ K PL+E V +RP+P +E + VN NDGWW G I + Y V
Sbjct: 398 EDGKEPLREEVNVSRIRPLP-LESVMVSPFERHDKVNALYNDGWWVGVIRKVLAKSSYLV 456
Query: 310 YFSSTNETLPYHCSRLRVHHDFIHGDW 230
F +T E L +H S+LR+H ++I G W
Sbjct: 457 LFKNTQELLKFHHSQLRLHQEWIDGKW 483
Score = 54.7 bits (130), Expect = 6e-07
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = -2
Query: 505 TLIVDEETKIPLKETVLPKDLRPVPPCVRT--RGGHYEMYQAVNVFDNDGWWYGKIIGLT 332
TL D+E PLKE V LRP P + + + + V+ F NDGWW G + +
Sbjct: 58 TLFFDKEGTKPLKEVVDMSQLRPPAPPMSEIEKKKKIVVGEEVDAFYNDGWWEGDVTEVL 117
Query: 331 GVKGYYVYFSSTNETLPYHCSRLRVHHDFIHGDW 230
+ V+F S+ E + + LR H +++ G W
Sbjct: 118 DDGKFSVFFRSSKEQIRFRKDELRFHREWVDGAW 151
Score = 50.8 bits (120), Expect = 9e-06
Identities = 27/82 (32%), Positives = 39/82 (46%)
Frame = -2
Query: 475 PLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWWYGKIIGLTGVKGYYVYFSST 296
PLKE +RP PP R + + +N F NDGWW G +I +YF +
Sbjct: 244 PLKEETDFLHIRPPPP--RDEDIDFAVGDKINAFYNDGWWVGVVIDGMKHGTVGIYFRQS 301
Query: 295 NETLPYHCSRLRVHHDFIHGDW 230
E + + LR+H D++ G W
Sbjct: 302 QEKMRFGRQGLRLHKDWVDGTW 323
>ref|NP_172123.1| hypothetical protein; protein id: At1g06340.1 [Arabidopsis
thaliana] gi|25406917|pir||B86199 hypothetical protein
[imported] - Arabidopsis thaliana
gi|8927671|gb|AAF82162.1|AC068143_4 Contains similarity
to a hypothetical protein T31J12.4 gi|4337176 from
Arabidopsis thaliana BAC T31J12 gb|AC006416
Length = 134
Score = 62.4 bits (150), Expect = 3e-09
Identities = 37/96 (38%), Positives = 52/96 (53%), Gaps = 5/96 (5%)
Frame = -2
Query: 502 LIVDEETKIPLKETVLPKDLRPVPPC---VRTRGGHYEMYQAVNVFDNDGWWYGKIIGLT 332
L+ D + L E + +LRP+PP V R G V+ FD DGWW G++ T
Sbjct: 44 LVSDTDQSKRLVEVISADELRPMPPKSLHVLIRCG-----DKVDAFDKDGWWVGEV---T 95
Query: 331 GVKG--YYVYFSSTNETLPYHCSRLRVHHDFIHGDW 230
V+ Y VYFS+T+E L Y LR HH++++G W
Sbjct: 96 AVRRNIYSVYFSTTDEELEYPLYSLRKHHEWVNGSW 131
>ref|NP_182245.1| unknown protein; protein id: At2g47230.1 [Arabidopsis thaliana]
gi|25364476|pir||F84912 hypothetical protein At2g47230
[imported] - Arabidopsis thaliana
gi|2275201|gb|AAB63823.1| unknown protein [Arabidopsis
thaliana]
Length = 701
Score = 48.1 bits (113), Expect = 6e-05
Identities = 25/82 (30%), Positives = 42/82 (50%)
Frame = -2
Query: 499 IVDEETKIPLKETVLPKDLRPVPPCVRTRGGHYEMYQAVNVFDNDGWWYGKIIGLTGVKG 320
+++++ PL E + P+ +RPVPP G E V+ DGWW G II
Sbjct: 48 LLNDDALSPLIENIEPRFIRPVPPENEYNGIVLEEGTVVDADHKDGWWTGVIIKKLENGK 107
Query: 319 YYVYFSSTNETLPYHCSRLRVH 254
++VY+ S + + + ++LR H
Sbjct: 108 FWVYYDSPPDIIEFERNQLRPH 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,553,037
Number of Sequences: 1393205
Number of extensions: 10974667
Number of successful extensions: 38195
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 36447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38138
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
