Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000161A_C12 KMC000161A_c12
(929 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177065.1| putative protease; protein id: At1g69020.1 [Ara... 72 2e-11
gb|AAK39550.1|AF355459_1 OpdB [Treponema denticola] 38 0.19
ref|NP_197082.1| proline-rich protein; protein id: At5g15780.1 [... 35 2.1
>ref|NP_177065.1| putative protease; protein id: At1g69020.1 [Arabidopsis thaliana]
gi|25404794|pir||F96714 probable protease T6L1.20
[imported] - Arabidopsis thaliana
gi|12323208|gb|AAG51580.1|AC011665_1 putative protease
[Arabidopsis thaliana]
Length = 798
Score = 71.6 bits (174), Expect = 2e-11
Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 17/91 (18%)
Frame = -1
Query: 539 KTSKVD**IPKYNFSGV-SLAWAQDASSLFYTMLDESS----------------GLTVFT 411
K + D +P+ GV SLAWA D +LFYT+ DE+ VFT
Sbjct: 202 KDLRTDRLVPRLEVDGVVSLAWALDGITLFYTVTDENQRPHRVVVTNVESDGRDDAVVFT 261
Query: 410 ESDSNYCVEITSTKDGKFTTVNLNLRTSLEE 318
E DS++CV+IT+TKDGKF T+N N RTS EE
Sbjct: 262 ERDSSFCVDITTTKDGKFVTINSNSRTSSEE 292
>gb|AAK39550.1|AF355459_1 OpdB [Treponema denticola]
Length = 685
Score = 38.1 bits (87), Expect = 0.19
Identities = 23/78 (29%), Positives = 37/78 (46%), Gaps = 15/78 (19%)
Frame = -1
Query: 506 YNFSG-VSLAWAQDASSLFYT--------------MLDESSGLTVFTESDSNYCVEITST 372
+++ G V+ AWA D+ +LFY+ LDE G V+ E D Y + T
Sbjct: 172 FSYDGAVTAAWASDSKTLFYSAIDSTLRSSKVFRQKLDEEKGTLVYEEKDVKYSCYVHET 231
Query: 371 KDGKFTTVNLNLRTSLEE 318
K +F ++ + T+ EE
Sbjct: 232 KTKEFIFISSSSSTTSEE 249
>ref|NP_197082.1| proline-rich protein; protein id: At5g15780.1 [Arabidopsis
thaliana] gi|11358712|pir||T51407 proline-rich protein -
Arabidopsis thaliana gi|9755623|emb|CAC01777.1|
proline-rich protein [Arabidopsis thaliana]
gi|27311645|gb|AAO00788.1| proline-rich protein
[Arabidopsis thaliana]
Length = 401
Score = 34.7 bits (78), Expect = 2.1
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 803 SVVVVGTVYCGTCFQQDFSMG-SHFTSDPFLAV 898
S VVVGTVYC TCF FS +H S +AV
Sbjct: 39 SAVVVGTVYCDTCFNGAFSKSPNHLISGALVAV 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 768,391,764
Number of Sequences: 1393205
Number of extensions: 16090632
Number of successful extensions: 33601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33599
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51582455952
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
