Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000160A_C01 KMC000160A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180478.1| pumilio-family RNA-binding protein, putative; p... 96 5e-19
gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein ... 94 1e-18
ref|NP_180482.1| pumilio-family RNA-binding protein, putative; p... 94 1e-18
dbj|BAB89558.1| putative pumilio/Mpt5 family RNA-binding protein... 94 2e-18
ref|NP_180483.1| pumilio-family RNA-binding protein, putative; p... 92 8e-18
>ref|NP_180478.1| pumilio-family RNA-binding protein, putative; protein id: At2g29140.1
[Arabidopsis thaliana] gi|25354254|pir||A84693
hypothetical protein At2g29140 [imported] - Arabidopsis
thaliana gi|3980417|gb|AAC95220.1| putative pumilio/Mpt5
family RNA-binding protein [Arabidopsis thaliana]
Length = 964
Score = 95.5 bits (236), Expect = 5e-19
Identities = 49/55 (89%), Positives = 50/55 (90%), Gaps = 1/55 (1%)
Frame = -2
Query: 648 LETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRSAAQS-PHP 487
LETCDD QRELIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGERR A QS P P
Sbjct: 907 LETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLPQP 961
>gb|AAM20149.1| putative pumilio/Mpt5 family RNA-binding protein [Arabidopsis
thaliana]
Length = 972
Score = 94.4 bits (233), Expect = 1e-18
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = -2
Query: 648 LETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRSAAQS 496
LETCDD QRELIL RIKVHLNALKKYTYGKHIVARVEKLVAAGERR A QS
Sbjct: 915 LETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 965
>ref|NP_180482.1| pumilio-family RNA-binding protein, putative; protein id:
At2g29190.1, supported by cDNA: gi_20465636 [Arabidopsis
thaliana] gi|25354256|pir||E84693 hypothetical protein
At2g29190 [imported] - Arabidopsis thaliana
gi|3980413|gb|AAC95216.1| putative pumilio/Mpt5 family
RNA-binding protein [Arabidopsis thaliana]
Length = 972
Score = 94.4 bits (233), Expect = 1e-18
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = -2
Query: 648 LETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRSAAQS 496
LETCDD QRELIL RIKVHLNALKKYTYGKHIVARVEKLVAAGERR A QS
Sbjct: 915 LETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 965
>dbj|BAB89558.1| putative pumilio/Mpt5 family RNA-binding protein [Oryza sativa
(japonica cultivar-group)]
Length = 1048
Score = 94.0 bits (232), Expect = 2e-18
Identities = 45/55 (81%), Positives = 50/55 (90%)
Frame = -2
Query: 648 LETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRSAAQSPHPT 484
LETCDD QRELILSR+KVHL+ALKKYTYGKHIVARVEKLVAAGERR Q+ +P+
Sbjct: 994 LETCDDQQRELILSRVKVHLSALKKYTYGKHIVARVEKLVAAGERRIGLQAQYPS 1048
>ref|NP_180483.1| pumilio-family RNA-binding protein, putative; protein id: At2g29200.1
[Arabidopsis thaliana] gi|25354258|pir||F84693
hypothetical protein At2g29200 [imported] - Arabidopsis
thaliana gi|3980412|gb|AAC95215.1| putative pumilio/Mpt5
family RNA-binding protein [Arabidopsis thaliana]
Length = 968
Score = 91.7 bits (226), Expect = 8e-18
Identities = 44/51 (86%), Positives = 47/51 (91%)
Frame = -2
Query: 648 LETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRSAAQS 496
LETCDD QRELIL+RIKVHL ALKKYTYGKH+VAR+EKLVAAGERR A QS
Sbjct: 911 LETCDDQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAGERRMALQS 961
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,268,638
Number of Sequences: 1393205
Number of extensions: 10720634
Number of successful extensions: 24970
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 23666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24846
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
