Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000157A_C01 KMC000157A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06763 hypothetical protein F15B8.240 - Arabidopsis thalian... 116 2e-25
ref|NP_191316.1| hypothetical protein; protein id: At3g57570.1 [... 116 2e-25
gb|AAN87998.1| OspC [Borrelia afzelii] 32 3.5
gb|AAN87999.1| OspC [Borrelia afzelii] 32 3.5
ref|NP_472180.1| highly similar to DNA polymerase III (gamma and... 32 3.5
>pir||T06763 hypothetical protein F15B8.240 - Arabidopsis thaliana
gi|4678290|emb|CAB41198.1| hypothetical protein
[Arabidopsis thaliana]
Length = 305
Score = 116 bits (290), Expect = 2e-25
Identities = 60/91 (65%), Positives = 76/91 (82%)
Frame = -3
Query: 523 LFSAVYHLGYAVLPYASELLKISLKALRKESEKERMAGAKLIASLMAREDVILEKISGGL 344
LFSA YHL +LP +S+LLK+SL+ L + SEKE++AGAKL+ASLMA EDVILE IS GL
Sbjct: 213 LFSATYHLKSTLLPVSSDLLKLSLRFLEQGSEKEKLAGAKLMASLMASEDVILENISEGL 272
Query: 343 LEARSVLSTVSSSDPSLELRQLCSQLLACIS 251
LEARSVLS S SDPS ++R++C++LLACI+
Sbjct: 273 LEARSVLSKASLSDPSRDVREVCAKLLACIT 303
>ref|NP_191316.1| hypothetical protein; protein id: At3g57570.1 [Arabidopsis thaliana]
gi|11358421|pir||T46193 hypothetical protein T8H10.170 -
Arabidopsis thaliana gi|6706428|emb|CAB66114.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1057
Score = 116 bits (290), Expect = 2e-25
Identities = 60/91 (65%), Positives = 76/91 (82%)
Frame = -3
Query: 523 LFSAVYHLGYAVLPYASELLKISLKALRKESEKERMAGAKLIASLMAREDVILEKISGGL 344
LFSA YHL +LP +S+LLK+SL+ L + SEKE++AGAKL+ASLMA EDVILE IS GL
Sbjct: 965 LFSATYHLKSTLLPVSSDLLKLSLRFLEQGSEKEKLAGAKLMASLMASEDVILENISEGL 1024
Query: 343 LEARSVLSTVSSSDPSLELRQLCSQLLACIS 251
LEARSVLS S SDPS ++R++C++LLACI+
Sbjct: 1025 LEARSVLSKASLSDPSRDVREVCAKLLACIT 1055
>gb|AAN87998.1| OspC [Borrelia afzelii]
Length = 198
Score = 32.3 bits (72), Expect = 3.5
Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
Frame = +3
Query: 279 SCRNSSDGSDEETVESTDLASNSP--PDIFSKITSSRAIRDAISFAPAILSFSDSFLRAF 452
SC NS G D + D ++ P +I KIT S A+ A+ A++S D +
Sbjct: 7 SCNNSGKGGDSASTNPADESAKGPNLTEISKKITDSNAVVLAVKEVEALVSSIDELAKTI 66
Query: 453 SEILRSS 473
+ + ++
Sbjct: 67 GKKIEAN 73
>gb|AAN87999.1| OspC [Borrelia afzelii]
Length = 194
Score = 32.3 bits (72), Expect = 3.5
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +3
Query: 279 SCRNSSDGSDEETVESTDLASNSP--PDIFSKITSSRAIRDAISFAPAILSFSDSFLRAF 452
SC NS G D + D ++ P +I KIT S A A+ ++S D +A
Sbjct: 7 SCNNSGKGGDSASTNPADESAKGPNLTEISKKITDSNAFVLAVKEVETLVSSIDELAKAI 66
Query: 453 SEILRSSDA*GRTA 494
+ + ++ G A
Sbjct: 67 GKKIDQNNGLGNEA 80
>ref|NP_472180.1| highly similar to DNA polymerase III (gamma and tau subunits)
[Listeria innocua] gi|25288579|pir||AF1788 DNA
polymerase III (gamma and tau chains) homolog dnaX
[imported] - Listeria innocua (strain Clip11262)
gi|16415387|emb|CAC98078.1| highly similar to DNA
polymerase III (gamma and tau subunits) [Listeria
innocua]
Length = 579
Score = 32.3 bits (72), Expect = 3.5
Identities = 19/68 (27%), Positives = 33/68 (47%)
Frame = +3
Query: 225 KMLFAAHGEDMHASNWEQSCRNSSDGSDEETVESTDLASNSPPDIFSKITSSRAIRDAIS 404
K + HG D N + C+ ++DGS + +E D ASN + + R IR+ +
Sbjct: 60 KAINCEHGHDGEPCNECEICKGTTDGSIPDVLE-IDAASN------NGVEEIRDIREKVK 112
Query: 405 FAPAILSF 428
+AP + +
Sbjct: 113 YAPTVAKY 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,979,027
Number of Sequences: 1393205
Number of extensions: 8282596
Number of successful extensions: 20943
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20939
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
