Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000155A_C01 KMC000155A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700950.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.4
dbj|BAB01195.1| emb|CAB77996.1~gene_id:MTO24.9~strong similarity... 32 3.2
gb|EAA22869.1| similar to chromosome 11 open reading frame 23 [P... 32 4.2
>ref|NP_700950.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496012|gb|AAN35674.1|AE014837_16 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 3334
Score = 33.5 bits (75), Expect = 1.4
Identities = 13/41 (31%), Positives = 28/41 (67%)
Frame = -3
Query: 447 CQDNTLDQTRVLPNEASSDAHMTDQVNQDAQVNEEGSMLVD 325
C+ N + ++ E SSD HM ++++ + +VN+EG++L++
Sbjct: 2285 CEKNEKNDNKL---EKSSDEHMNEKISDNVKVNDEGTLLLE 2322
>dbj|BAB01195.1| emb|CAB77996.1~gene_id:MTO24.9~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 552
Score = 32.3 bits (72), Expect = 3.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 486 KDHEENSDHAAMDCQDNTLDQTRVLPNEASSDAHMTDQVNQDAQVNEEGSMLVDE 322
K+ EE + + +++ D + L E SSD +M D+ + QV SM +DE
Sbjct: 104 KEEEEKEEEGNVTGGESSNDSSTTLGEEYSSDKNMNDETAVENQVEIPASMEIDE 158
>gb|EAA22869.1| similar to chromosome 11 open reading frame 23 [Plasmodium yoelii
yoelii]
Length = 1060
Score = 32.0 bits (71), Expect = 4.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 378 DQVNQDAQVNEEGSMLVDEGGIQSGIVST*DVSSGMDESNFT 253
D +N+D Q+N + +E IQ+ I S D + + SNF+
Sbjct: 396 DDINKDTQLNHISKKIKEEKNIQTQITSNEDANENLTTSNFS 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,945,350
Number of Sequences: 1393205
Number of extensions: 7440425
Number of successful extensions: 16736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16728
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
