Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000153A_C01 KMC000153A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563703.1| unknown protein; protein id: At1g04140.1, suppo... 106 3e-22
pir||T00959 hypothetical protein F20D22.9 - Arabidopsis thaliana... 105 5e-22
ref|NP_199206.1| putative protein; protein id: At5g43930.1, supp... 103 3e-21
dbj|BAB09053.1| contains similarity to unknown protein~gene_id:M... 103 3e-21
ref|NP_655650.1| PALP, Pyridoxal-phosphate dependent enzyme [Bac... 35 1.2
>ref|NP_563703.1| unknown protein; protein id: At1g04140.1, supported by cDNA:
gi_14334755 [Arabidopsis thaliana]
gi|14334756|gb|AAK59556.1| unknown protein [Arabidopsis
thaliana] gi|22136910|gb|AAM91799.1| unknown protein
[Arabidopsis thaliana]
Length = 790
Score = 106 bits (264), Expect = 3e-22
Identities = 51/75 (68%), Positives = 61/75 (81%)
Frame = -3
Query: 651 YTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILKYDGAHVVSG 472
+TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTKEGKLRI +Y+ A +
Sbjct: 710 FTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFRYNTAAASNL 769
Query: 471 TGPSYYPEETIIGVR 427
T P+ P+E + V+
Sbjct: 770 TAPNSSPDENLAEVQ 784
>pir||T00959 hypothetical protein F20D22.9 - Arabidopsis thaliana
gi|3142301|gb|AAC16752.1| Contains similarity to neural
cell adhesion molecule 2, large isoform precursor
gb|M76710 from Xenopus laevis, and beta transducin from
S. cerevisiae gb|Q05946. ESTs gb|N65081 gb|Z30910,
gb|Z34190, gb|Z34611, gb|R30101, gb|H36304, and
gb|N65606 come from this gene. [Arabidopsis thaliana]
Length = 838
Score = 105 bits (262), Expect = 5e-22
Identities = 50/71 (70%), Positives = 59/71 (82%)
Frame = -3
Query: 651 YTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILKYDGAHVVSG 472
+TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTKEGKLRI +Y+ A +
Sbjct: 713 FTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFRYNTAAASNL 772
Query: 471 TGPSYYPEETI 439
T P+ P+E +
Sbjct: 773 TAPNSSPDENL 783
>ref|NP_199206.1| putative protein; protein id: At5g43930.1, supported by cDNA:
gi_15450893, supported by cDNA: gi_17978680 [Arabidopsis
thaliana] gi|15450894|gb|AAK96718.1| Unknown protein
[Arabidopsis thaliana] gi|17978681|gb|AAL47334.1|
unknown protein [Arabidopsis thaliana]
Length = 726
Score = 103 bits (256), Expect = 3e-21
Identities = 49/64 (76%), Positives = 56/64 (86%)
Frame = -3
Query: 651 YTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILKYDGAHVVSG 472
+TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTKEGKLRI +Y+ A +
Sbjct: 662 FTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFQYNTAATSNF 721
Query: 471 TGPS 460
TGP+
Sbjct: 722 TGPN 725
>dbj|BAB09053.1| contains similarity to unknown protein~gene_id:MRH10.2~pir||T00959
[Arabidopsis thaliana]
Length = 729
Score = 103 bits (256), Expect = 3e-21
Identities = 49/64 (76%), Positives = 56/64 (86%)
Frame = -3
Query: 651 YTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRILKYDGAHVVSG 472
+TVLE+YRVSDMELVRVLPS+EDEVNVACFHP GGGLVYGTKEGKLRI +Y+ A +
Sbjct: 665 FTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFQYNTAATSNF 724
Query: 471 TGPS 460
TGP+
Sbjct: 725 TGPN 728
>ref|NP_655650.1| PALP, Pyridoxal-phosphate dependent enzyme [Bacillus anthracis
A2012]
Length = 323
Score = 34.7 bits (78), Expect = 1.2
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Frame = -3
Query: 633 YRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTK---------EGKLRILKYDGAHV 481
Y VSD EL R+L D N+ P A G++ K E +L G H+
Sbjct: 236 YTVSDEELYRLLKELADTENIY-LEPSALAGMIGPVKVCKEDAYLQEQQLMEKMKKGTHI 294
Query: 480 VSGTGPSYYPEETIIG 433
V GTG S PE+ + G
Sbjct: 295 VWGTGGSMVPEDVMNG 310
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,028,395
Number of Sequences: 1393205
Number of extensions: 12359972
Number of successful extensions: 26443
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 25605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26438
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
