Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000152A_C06 KMC000152A_c06
(680 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702823.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.6
ref|NP_195401.1| putative protein; protein id: At4g36830.1 [Arab... 30 7.2
>ref|NP_702823.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498239|emb|CAD49210.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2031
Score = 34.3 bits (77), Expect = 1.6
Identities = 22/82 (26%), Positives = 31/82 (36%), Gaps = 4/82 (4%)
Frame = +1
Query: 352 KVDNF----RSQLIYSQNTRTPTGRDDTQNNPGR*CTELPPT*EDNEVTGNVHSNYARVL 519
KVDNF ++ ++Y + + D+ NN N N +NY
Sbjct: 1663 KVDNFVIQCKTNMLYVRKKKKKINNDNINNN-------------GNNYRNNYRNNYHHYN 1709
Query: 520 KLPGLCTNINCRIAKCPAHMCH 585
+ CTNI CR KC H
Sbjct: 1710 VITKKCTNIKCRNNKCCTQNVH 1731
>ref|NP_195401.1| putative protein; protein id: At4g36830.1 [Arabidopsis thaliana]
gi|25372800|pir||H85434 hypothetical protein AT4g36830
[imported] - Arabidopsis thaliana
gi|4006888|emb|CAB16818.1| putative protein [Arabidopsis
thaliana] gi|7270632|emb|CAB80349.1| putative protein
[Arabidopsis thaliana]
Length = 289
Score = 29.6 bits (65), Expect(2) = 7.2
Identities = 20/59 (33%), Positives = 27/59 (44%)
Frame = -1
Query: 428 FWVSSRPVGVLVFWEYIS*DLKLSTFKHDFLKIFCSL*RVLLLGFGENCNFICSFVSVL 252
F + +RP G + FW Y+ L+ F H F IF L L CN + +F S L
Sbjct: 119 FPLGTRPSGRVFFWSYV---FYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSVMAFTSFL 174
Score = 21.2 bits (43), Expect(2) = 7.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 262 FQFWMSNGLPKSLSP*YTV 206
++FW GLP S P + V
Sbjct: 200 YRFWTGFGLPGSAFPSFVV 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,691,939
Number of Sequences: 1393205
Number of extensions: 12591295
Number of successful extensions: 25736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25733
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
