Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000146A_C01 KMC000146A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191975.2| DEAD/DEAH box RNA helicase, putative; protein i... 154 1e-36
pir||T51741 RNA helicase RH8 [imported] - Arabidopsis thaliana g... 154 1e-36
pir||T01230 probable RNA helicase (EC 3.6.1.-) F6N23.6 - Arabido... 154 1e-36
gb|AAG13612.1|AC078840_3 putative RNA helicase [Oryza sativa (ja... 142 4e-33
gb|AAN05541.1| putative RNA helicase [Oryza sativa (japonica cul... 139 3e-32
>ref|NP_191975.2| DEAD/DEAH box RNA helicase, putative; protein id: At4g00660.1,
supported by cDNA: gi_19423938, supported by cDNA:
gi_21280838 [Arabidopsis thaliana]
gi|19423939|gb|AAL87312.1| putative RNA helicase
[Arabidopsis thaliana] gi|21280839|gb|AAM45033.1|
putative RNA helicase [Arabidopsis thaliana]
Length = 505
Score = 154 bits (389), Expect = 1e-36
Identities = 73/75 (97%), Positives = 75/75 (99%)
Frame = -2
Query: 678 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTE 499
GIDIQAVNVVINFDFPKNAETYLHRVGRSGR+GHLGLAVNLITYEDRFNLYRIEQELGTE
Sbjct: 431 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE 490
Query: 498 IKQIPPHIDQAIYCR 454
IKQIPPHIDQAIYC+
Sbjct: 491 IKQIPPHIDQAIYCQ 505
>pir||T51741 RNA helicase RH8 [imported] - Arabidopsis thaliana
gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis
thaliana]
Length = 505
Score = 154 bits (389), Expect = 1e-36
Identities = 73/75 (97%), Positives = 75/75 (99%)
Frame = -2
Query: 678 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTE 499
GIDIQAVNVVINFDFPKNAETYLHRVGRSGR+GHLGLAVNLITYEDRFNLYRIEQELGTE
Sbjct: 431 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE 490
Query: 498 IKQIPPHIDQAIYCR 454
IKQIPPHIDQAIYC+
Sbjct: 491 IKQIPPHIDQAIYCQ 505
>pir||T01230 probable RNA helicase (EC 3.6.1.-) F6N23.6 - Arabidopsis thaliana
gi|3047117|gb|AAC13628.1| similar to ATP-dependent RNA
helicases [Arabidopsis thaliana]
gi|7267405|emb|CAB80875.1| putative RNA helicase
[Arabidopsis thaliana]
Length = 499
Score = 154 bits (389), Expect = 1e-36
Identities = 73/75 (97%), Positives = 75/75 (99%)
Frame = -2
Query: 678 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTE 499
GIDIQAVNVVINFDFPKNAETYLHRVGRSGR+GHLGLAVNLITYEDRFNLYRIEQELGTE
Sbjct: 425 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE 484
Query: 498 IKQIPPHIDQAIYCR 454
IKQIPPHIDQAIYC+
Sbjct: 485 IKQIPPHIDQAIYCQ 499
>gb|AAG13612.1|AC078840_3 putative RNA helicase [Oryza sativa (japonica cultivar-group)]
Length = 521
Score = 142 bits (358), Expect = 4e-33
Identities = 67/75 (89%), Positives = 71/75 (94%)
Frame = -2
Query: 678 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTE 499
GIDIQAVNVVINFDFPK +ETYLHRVGRSGR+GHLGLAVNLITYEDRFNLYRIEQELGTE
Sbjct: 447 GIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE 506
Query: 498 IKQIPPHIDQAIYCR 454
IK IPP ID A+YC+
Sbjct: 507 IKTIPPQIDLAVYCQ 521
>gb|AAN05541.1| putative RNA helicase [Oryza sativa (japonica cultivar-group)]
Length = 521
Score = 139 bits (351), Expect = 3e-32
Identities = 66/75 (88%), Positives = 70/75 (93%)
Frame = -2
Query: 678 GIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTE 499
GI IQAVNVVINFDFPK +ETYLHRVGRSGR+GHLGLAVNLITYEDRFNLYRIEQELGTE
Sbjct: 447 GIGIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE 506
Query: 498 IKQIPPHIDQAIYCR 454
IK IPP ID A+YC+
Sbjct: 507 IKTIPPQIDLAVYCQ 521
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,828,934
Number of Sequences: 1393205
Number of extensions: 12025817
Number of successful extensions: 34340
Number of sequences better than 10.0: 1446
Number of HSP's better than 10.0 without gapping: 33474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34267
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
