KMC000142A_c03
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC000142A_C03 KMC000142A_c03
gcccccctttttTTGTGGATGCAATAGAATATAGTCAATAGAATATAGTCGAACATTATA
GGGACTCCCAGGTTTCTTCGGATTTTCACCCTGCCACCCATGTACAAGAGCATTTATGAG
TGTAAAATCATTTCAGCATTACTGCATGAACTCCTATATCTGATCCCAGAAAAAAGGAAG
GCAAAAATTCTTCTATATGAATTAACAAACTAAAAGTTAACACTAGTTTTCAGATGGAAT
GTGAAGGTAAGGCAGAACCAGGTAAAGTTCTACCAATGACCAATAATATTAAACTTCGAA
CACGAAGGACATTTGGTTGGATATTGTAAGATATCCAAAACGGGGTCCTTTCATCGAAAT
TAACTGACAAAAGATTCTGAAGCCGAAGATCAATCATTATGGATTCACGTCCACTAATCA
GATACAATGAGGAGCGGAAGCACAAAATGAGTATCAATAACAAGTCACTTACTGGTGGAA
TAAAACCATAGCTCTGTCCTTCCCAGTAGGGAACATTTCCACCATGATCAATCACAATAT
GACAAGTTTCCCCTGGAGGCCTTGGGTCCCACTATTCTCTCAACAGAAACAATGGTTGTA
TATGGTGGTTTAGGGCTGGTGCAGTTCAAGGGAGGCTCTGAAGCACCTTCCAATGCGAAT
GGGGAGACAATCACTTGGGGTACACTCGCTGGTGGCACGGGCACTGACATGCATATCACC
TGAGGACTTCTTACAC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000142A_C03 KMC000142A_c03
(736 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06773 ferredoxin-NADP reductase (EC 1.18.1.2) - garden pea... 70 7e-25
sp|Q41014|FENS_PEA Ferredoxin--NADP reductase, root isozyme, chl... 70 7e-25
sp|P41345|FENS_ORYSA Ferredoxin--NADP reductase, root isozyme, c... 71 4e-24
sp|O04397|FENS_TOBAC Ferredoxin--NADP reductase, root-type isozy... 67 2e-23
dbj|BAA02248.1| ferredoxin-NADP+ reductase enzyme [Oryza sativa ... 71 1e-22
>pir||T06773 ferredoxin-NADP reductase (EC 1.18.1.2) - garden pea (fragment)
gi|1480347|emb|CAA67796.1| ferrodoxin NADP
oxidoreductase [Pisum sativum]
Length = 378
Score = 70.5 bits (171), Expect(2) = 7e-25
Identities = 40/59 (67%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = -3
Query: 731 RSPQVICMSVPVPPASVPQVIVSPFALEGASEPPLNCTSPKPPYT-TIVSVERIVGPKA 558
R+ VICMSV ASVP+V VSP LE SEPPLN PK PYT TIVSVER+VGPKA
Sbjct: 55 RNHNVICMSVQ--QASVPKVTVSPLELENPSEPPLNLHKPKEPYTATIVSVERLVGPKA 111
Score = 65.9 bits (159), Expect(2) = 7e-25
Identities = 26/31 (83%), Positives = 28/31 (89%)
Frame = -1
Query: 565 PRPPGETCHIVIDHGGNVPYWEGQSYGFIPP 473
P+ PGETCHIVI+H GNVPYWEGQSYG IPP
Sbjct: 109 PKAPGETCHIVINHDGNVPYWEGQSYGVIPP 139
Score = 40.8 bits (94), Expect = 0.020
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = -2
Query: 90 GENPKKPGSPYNVRLYSI 37
GENPKKPGSP+NVRLYSI
Sbjct: 140 GENPKKPGSPHNVRLYSI 157
>sp|Q41014|FENS_PEA Ferredoxin--NADP reductase, root isozyme, chloroplast precursor
(FNR)
Length = 377
Score = 70.5 bits (171), Expect(2) = 7e-25
Identities = 40/59 (67%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Frame = -3
Query: 731 RSPQVICMSVPVPPASVPQVIVSPFALEGASEPPLNCTSPKPPYT-TIVSVERIVGPKA 558
R+ VICMSV ASVP+V VSP LE SEPPLN PK PYT TIVSVER+VGPKA
Sbjct: 54 RNHNVICMSVQ--QASVPKVTVSPLELENPSEPPLNLHKPKEPYTATIVSVERLVGPKA 110
Score = 65.9 bits (159), Expect(2) = 7e-25
Identities = 26/31 (83%), Positives = 28/31 (89%)
Frame = -1
Query: 565 PRPPGETCHIVIDHGGNVPYWEGQSYGFIPP 473
P+ PGETCHIVI+H GNVPYWEGQSYG IPP
Sbjct: 108 PKAPGETCHIVINHDGNVPYWEGQSYGVIPP 138
Score = 40.8 bits (94), Expect = 0.020
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = -2
Query: 90 GENPKKPGSPYNVRLYSI 37
GENPKKPGSP+NVRLYSI
Sbjct: 139 GENPKKPGSPHNVRLYSI 156
>sp|P41345|FENS_ORYSA Ferredoxin--NADP reductase, root isozyme, chloroplast precursor
(FNR) gi|7427853|pir||T03758 probable ferredoxin-NADP
reductase (EC 1.18.1.2) precursor, root - rice
gi|435647|dbj|BAA04232.1| ferredoxin-NADP+ reductase
[Oryza sativa (japonica cultivar-group)]
gi|902936|dbj|BAA07479.1| root ferredoxin-NADP+
reductase [Oryza sativa (japonica cultivar-group)]
gi|14718314|gb|AAK72892.1|AC091123_11 ferredoxin-NADP+
reductase [Oryza sativa] gi|1096932|prf||2113196A
ferredoxin-NADP oxidoreductase
Length = 378
Score = 70.9 bits (172), Expect(2) = 4e-24
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = -1
Query: 565 PRPPGETCHIVIDHGGNVPYWEGQSYGFIPP 473
P+ PGETCHIVIDHGGNVPYWEGQSYG IPP
Sbjct: 109 PKAPGETCHIVIDHGGNVPYWEGQSYGIIPP 139
Score = 62.8 bits (151), Expect(2) = 4e-24
Identities = 36/56 (64%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = -3
Query: 722 QVICMSVPVPPASVPQVIVSPFALEGASEPPLNCTSPKPPYT-TIVSVERIVGPKA 558
+V+CMSV AS +V V P LE A+EPPLN PK PYT TIVSVERIVGPKA
Sbjct: 58 KVLCMSVQ--QASESKVAVKPLDLESANEPPLNTYKPKEPYTATIVSVERIVGPKA 111
Score = 39.7 bits (91), Expect = 0.045
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -2
Query: 90 GENPKKPGSPYNVRLYSI 37
GENPKKPG+P+NVRLYSI
Sbjct: 140 GENPKKPGAPHNVRLYSI 157
>sp|O04397|FENS_TOBAC Ferredoxin--NADP reductase, root-type isozyme, chloroplast
precursor (FNR) gi|7433372|pir||T02215 ferredoxin-NADP
reductase (EC 1.18.1.2) precursor - common tobacco
gi|2190038|dbj|BAA20365.1| ferredoxin-NADP
oxidoreductase [Nicotiana tabacum]
Length = 375
Score = 66.6 bits (161), Expect(2) = 2e-23
Identities = 26/31 (83%), Positives = 28/31 (89%)
Frame = -1
Query: 565 PRPPGETCHIVIDHGGNVPYWEGQSYGFIPP 473
P+ PGETCHIVIDH GN+PYWEGQSYG IPP
Sbjct: 107 PKAPGETCHIVIDHDGNLPYWEGQSYGVIPP 137
Score = 65.1 bits (157), Expect(2) = 2e-23
Identities = 36/59 (61%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Frame = -3
Query: 731 RSPQVICMSVPVPPASVPQVIVSPFALEGASEPPLNCTSPKPPYT-TIVSVERIVGPKA 558
R+ ++CMSV AS +V VSP +LE A EPPLN PK PYT TIVSVER+VGPKA
Sbjct: 53 RNQHIVCMSVQ--QASKAKVSVSPLSLEDAKEPPLNIYKPKEPYTATIVSVERLVGPKA 109
Score = 37.4 bits (85), Expect = 0.22
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = -2
Query: 90 GENPKKPGSPYNVRLYSI 37
GENPKKPG+P+NVRLY I
Sbjct: 138 GENPKKPGNPHNVRLYLI 155
>dbj|BAA02248.1| ferredoxin-NADP+ reductase enzyme [Oryza sativa (japonica
cultivar-group)]
Length = 317
Score = 70.9 bits (172), Expect(2) = 1e-22
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = -1
Query: 565 PRPPGETCHIVIDHGGNVPYWEGQSYGFIPP 473
P+ PGETCHIVIDHGGNVPYWEGQSYG IPP
Sbjct: 48 PKAPGETCHIVIDHGGNVPYWEGQSYGIIPP 78
Score = 58.2 bits (139), Expect(2) = 1e-22
Identities = 32/48 (66%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = -3
Query: 698 VPPASVPQVIVSPFALEGASEPPLNCTSPKPPYT-TIVSVERIVGPKA 558
V AS +V V P LE A+EPPLN PK PYT TIVSVERIVGPKA
Sbjct: 3 VQQASESKVAVKPLDLESANEPPLNTYKPKEPYTATIVSVERIVGPKA 50
Score = 39.7 bits (91), Expect = 0.045
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -2
Query: 90 GENPKKPGSPYNVRLYSI 37
GENPKKPG+P+NVRLYSI
Sbjct: 79 GENPKKPGAPHNVRLYSI 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 671,779,332
Number of Sequences: 1393205
Number of extensions: 15242352
Number of successful extensions: 40620
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 37584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40428
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
GENLf012g10 |
BP062993 |
1 |
546 |
| 2 |
MPDL008e11_f |
AV776928 |
192 |
549 |
| 3 |
MRL045c04_f |
BP085894 |
242 |
557 |
| 4 |
GNLf001e06 |
BP074857 |
246 |
690 |
| 5 |
GENLf081f05 |
BP066765 |
270 |
744 |
|
Lotus japonicus
Kazusa DNA Research Institute