Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000141A_C02 KMC000141A_c02
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC15996.1| putative MSP1(mitochondrial sorting of proteins)... 128 6e-29
pir||C86159 hypothetical protein F22D16.11 - Arabidopsis thalian... 127 1e-28
ref|NP_171788.1| hypothetical protein; protein id: At1g02890.1 [... 127 1e-28
ref|NP_567237.1| coded for by A. thaliana cDNA T75804; protein i... 125 4e-28
gb|AAM13995.1| unknown protein [Arabidopsis thaliana] 125 4e-28
>dbj|BAC15996.1| putative MSP1(mitochondrial sorting of proteins) protein homolog
[Oryza sativa (japonica cultivar-group)]
Length = 1251
Score = 128 bits (322), Expect = 6e-29
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = -2
Query: 669 HCPIREVLEKEKKERSLALAENEPLPGLCSSADIRALKMEDFRYAHEQVGASVSSDSTNM 490
HCPIRE+LE+EKKER+ A AEN+PLP SS+D+R+L+M DF++AHEQV AS++SDS NM
Sbjct: 1167 HCPIREILEREKKERASAEAENKPLPPPRSSSDVRSLRMNDFKHAHEQVCASITSDSRNM 1226
Query: 489 NELQQWNDLYGEGGSRKVRSLSYFM 415
EL QWNDLYGEGGSRK SLSYFM
Sbjct: 1227 TELIQWNDLYGEGGSRKKTSLSYFM 1251
>pir||C86159 hypothetical protein F22D16.11 - Arabidopsis thaliana
gi|6056413|gb|AAF02877.1|AC009525_11 Unknown protein
[Arabidopsis thaliana]
Length = 1217
Score = 127 bits (320), Expect = 1e-28
Identities = 62/85 (72%), Positives = 71/85 (82%)
Frame = -2
Query: 669 HCPIREVLEKEKKERSLALAENEPLPGLCSSADIRALKMEDFRYAHEQVGASVSSDSTNM 490
H PIRE+LEKEKKERS+A AEN +P L SS D+R L M DF+ AH+QV ASV+SDS+NM
Sbjct: 1133 HLPIREILEKEKKERSVAQAENRAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNM 1192
Query: 489 NELQQWNDLYGEGGSRKVRSLSYFM 415
NELQQWN+LYGEGGSRK SLSYFM
Sbjct: 1193 NELQQWNELYGEGGSRKKTSLSYFM 1217
>ref|NP_171788.1| hypothetical protein; protein id: At1g02890.1 [Arabidopsis thaliana]
Length = 1240
Score = 127 bits (320), Expect = 1e-28
Identities = 62/85 (72%), Positives = 71/85 (82%)
Frame = -2
Query: 669 HCPIREVLEKEKKERSLALAENEPLPGLCSSADIRALKMEDFRYAHEQVGASVSSDSTNM 490
H PIRE+LEKEKKERS+A AEN +P L SS D+R L M DF+ AH+QV ASV+SDS+NM
Sbjct: 1156 HLPIREILEKEKKERSVAQAENRAMPQLYSSTDVRPLNMNDFKTAHDQVCASVASDSSNM 1215
Query: 489 NELQQWNDLYGEGGSRKVRSLSYFM 415
NELQQWN+LYGEGGSRK SLSYFM
Sbjct: 1216 NELQQWNELYGEGGSRKKTSLSYFM 1240
>ref|NP_567237.1| coded for by A. thaliana cDNA T75804; protein id: At4g02470.1
[Arabidopsis thaliana] gi|7487016|pir||T01303
hypothetical protein T14P8.7 - Arabidopsis thaliana
gi|3193292|gb|AAC19276.1| similar to ATPases associated
with various cellular activites (Pfam: AAA.hmm, score:
230.91) [Arabidopsis thaliana]
gi|7269007|emb|CAB80740.1| coded for by A. thaliana cDNA
T88606, coded for by A. thaliana cDNA T75804~strong
similarity to similar to ATPases associated with various
cellular activites (Pfam: AAA.hmm, score:
230.91)~Contains ATP/GTP-binding site motif A (P-loop)
AA111-118~contains EST gb:AI997984.1, AA712402, T88606,
AA650889, T75804 [Arabidopsis thaliana]
Length = 371
Score = 125 bits (315), Expect = 4e-28
Identities = 61/85 (71%), Positives = 70/85 (81%)
Frame = -2
Query: 669 HCPIREVLEKEKKERSLALAENEPLPGLCSSADIRALKMEDFRYAHEQVGASVSSDSTNM 490
H PIRE+LEKEKKE++ A AEN P P L S D+R+L M DF+ AH+QV ASVSSDS+NM
Sbjct: 287 HFPIREILEKEKKEKTAAQAENRPTPPLYSCTDVRSLTMNDFKAAHDQVCASVSSDSSNM 346
Query: 489 NELQQWNDLYGEGGSRKVRSLSYFM 415
NELQQWN+LYGEGGSRK SLSYFM
Sbjct: 347 NELQQWNELYGEGGSRKKTSLSYFM 371
>gb|AAM13995.1| unknown protein [Arabidopsis thaliana]
Length = 1265
Score = 125 bits (315), Expect = 4e-28
Identities = 61/85 (71%), Positives = 70/85 (81%)
Frame = -2
Query: 669 HCPIREVLEKEKKERSLALAENEPLPGLCSSADIRALKMEDFRYAHEQVGASVSSDSTNM 490
H PIRE+LEKEKKE++ A AEN P P L S D+R+L M DF+ AH+QV ASVSSDS+NM
Sbjct: 1181 HFPIREILEKEKKEKTAAQAENRPTPPLYSCTDVRSLTMNDFKAAHDQVCASVSSDSSNM 1240
Query: 489 NELQQWNDLYGEGGSRKVRSLSYFM 415
NELQQWN+LYGEGGSRK SLSYFM
Sbjct: 1241 NELQQWNELYGEGGSRKKTSLSYFM 1265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,781,742
Number of Sequences: 1393205
Number of extensions: 13170676
Number of successful extensions: 33538
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 32120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33495
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
