Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000139A_C04 KMC000139A_c04
(833 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB18107.1| leghemoglobin [Lotus japonicus] 151 7e-52
dbj|BAB18106.1| leghemoglobin [Lotus japonicus] 149 4e-51
sp|Q9FEP8|LGB_LOTJA Leghemoglobin gi|11230993|dbj|BAB18108.1| le... 123 4e-40
dbj|BAA28597.1| leghemoglobin [Lotus japonicus] 123 4e-40
sp|P28010|LGB4_MEDSA Leghemoglobin gi|282905|pir||S28613 leghemo... 122 1e-37
>dbj|BAB18107.1| leghemoglobin [Lotus japonicus]
Length = 123
Score = 151 bits (382), Expect(2) = 7e-52
Identities = 78/78 (100%), Positives = 78/78 (100%)
Frame = -2
Query: 382 TRDAAAQLLAKGEVTLADASLGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSEELST 203
TRDAAAQLLAKGEVTLADASLGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSEELST
Sbjct: 46 TRDAAAQLLAKGEVTLADASLGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSEELST 105
Query: 202 AWGVAYDGLAAAIKKAMS 149
AWGVAYDGLAAAIKKAMS
Sbjct: 106 AWGVAYDGLAAAIKKAMS 123
Score = 75.5 bits (184), Expect(2) = 7e-52
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = -1
Query: 587 ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGLVSE 471
ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGL +
Sbjct: 10 ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGLTRD 48
>dbj|BAB18106.1| leghemoglobin [Lotus japonicus]
Length = 123
Score = 149 bits (375), Expect(2) = 4e-51
Identities = 76/78 (97%), Positives = 77/78 (98%)
Frame = -2
Query: 382 TRDAAAQLLAKGEVTLADASLGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSEELST 203
TRDAAAQLLAKGEVTLADA LGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSE+LST
Sbjct: 46 TRDAAAQLLAKGEVTLADAGLGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSEDLST 105
Query: 202 AWGVAYDGLAAAIKKAMS 149
AWGVAYDGLAAAIKKAMS
Sbjct: 106 AWGVAYDGLAAAIKKAMS 123
Score = 75.5 bits (184), Expect(2) = 4e-51
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = -1
Query: 587 ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGLVSE 471
ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGL +
Sbjct: 10 ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGLTRD 48
>sp|Q9FEP8|LGB_LOTJA Leghemoglobin gi|11230993|dbj|BAB18108.1| leghemoglobin [Lotus
japonicus]
Length = 147
Score = 123 bits (309), Expect(2) = 4e-40
Identities = 64/78 (82%), Positives = 70/78 (89%), Gaps = 1/78 (1%)
Frame = -2
Query: 382 TRDAAAQLLAKGEVTLADASLGAVHVQKAVADPHFAVVKEALLKTVQAAVG-DKWSEELS 206
TRDAA QL+AKGEVTLADASLGAVHVQKAV DPHF VVKEALL+TV+ AVG D+WS++LS
Sbjct: 69 TRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGADEWSDDLS 128
Query: 205 TAWGVAYDGLAAAIKKAM 152
TAW AYDGLA AIKKAM
Sbjct: 129 TAWEGAYDGLATAIKKAM 146
Score = 64.3 bits (155), Expect(2) = 4e-40
Identities = 31/39 (79%), Positives = 32/39 (81%)
Frame = -1
Query: 587 ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGLVSE 471
ILE AP AKDMFSFLK SGP HSPQLQAHAEKVF L +
Sbjct: 33 ILEIAPTAKDMFSFLKESGPKHSPQLQAHAEKVFALTRD 71
Score = 58.2 bits (139), Expect = 1e-07
Identities = 29/45 (64%), Positives = 38/45 (84%)
Frame = -2
Query: 805 GFTAQQDALVGSSYEAFKQNLPSNSVLFYTL*VLSLSVSLIYVFS 671
GFTAQQ+ALVGSSYE FK+NLP+NSVLFYT+ +L ++ + +FS
Sbjct: 2 GFTAQQEALVGSSYETFKKNLPTNSVLFYTV-ILEIAPTAKDMFS 45
>dbj|BAA28597.1| leghemoglobin [Lotus japonicus]
Length = 137
Score = 123 bits (309), Expect(2) = 4e-40
Identities = 64/78 (82%), Positives = 70/78 (89%), Gaps = 1/78 (1%)
Frame = -2
Query: 382 TRDAAAQLLAKGEVTLADASLGAVHVQKAVADPHFAVVKEALLKTVQAAVG-DKWSEELS 206
TRDAA QL+AKGEVTLADASLGAVHVQKAV DPHF VVKEALL+TV+ AVG D+WS++LS
Sbjct: 59 TRDAATQLVAKGEVTLADASLGAVHVQKAVTDPHFVVVKEALLQTVKEAVGADEWSDDLS 118
Query: 205 TAWGVAYDGLAAAIKKAM 152
TAW AYDGLA AIKKAM
Sbjct: 119 TAWEGAYDGLATAIKKAM 136
Score = 64.3 bits (155), Expect(2) = 4e-40
Identities = 31/39 (79%), Positives = 32/39 (81%)
Frame = -1
Query: 587 ILEKAPAAKDMFSFLKASGPTHSPQLQAHAEKVFGLVSE 471
ILE AP AKDMFSFLK SGP HSPQLQAHAEKVF L +
Sbjct: 23 ILEIAPTAKDMFSFLKESGPKHSPQLQAHAEKVFALTRD 61
Score = 38.1 bits (87), Expect = 0.16
Identities = 18/35 (51%), Positives = 27/35 (76%)
Frame = -2
Query: 775 GSSYEAFKQNLPSNSVLFYTL*VLSLSVSLIYVFS 671
G +YE FK+NLP+NSVLFYT+ +L ++ + +FS
Sbjct: 2 GGAYETFKKNLPTNSVLFYTV-ILEIAPTAKDMFS 35
>sp|P28010|LGB4_MEDSA Leghemoglobin gi|282905|pir||S28613 leghemoglobin MsLb3 - alfalfa
gi|166396|gb|AAB48005.1| leghemoglobin [Medicago sativa]
Length = 147
Score = 122 bits (305), Expect(2) = 1e-37
Identities = 58/77 (75%), Positives = 67/77 (86%)
Frame = -2
Query: 379 RDAAAQLLAKGEVTLADASLGAVHVQKAVADPHFAVVKEALLKTVQAAVGDKWSEELSTA 200
RD+A QL A GEV L DA+LG++H+QK V DPHF VVKEALLKT++ AVGDKWSEELST+
Sbjct: 71 RDSAVQLRATGEVVLGDATLGSIHIQKGVVDPHFVVVKEALLKTIKEAVGDKWSEELSTS 130
Query: 199 WGVAYDGLAAAIKKAMS 149
W VAYDGLA+AIKKAMS
Sbjct: 131 WEVAYDGLASAIKKAMS 147
Score = 57.4 bits (137), Expect(2) = 1e-37
Identities = 31/40 (77%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
Frame = -1
Query: 587 ILEKAPAAKDMFSFLKAS-GPTHSPQLQAHAEKVFGLVSE 471
ILEKAPAAK MFSFLK S G SPQLQAHAEKVFG+V +
Sbjct: 33 ILEKAPAAKGMFSFLKDSAGVQDSPQLQAHAEKVFGMVRD 72
Score = 48.1 bits (113), Expect = 2e-04
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = -2
Query: 805 GFTAQQDALVGSSYEAFKQNLPSNSVLFYT 716
GFTA Q+ALV SS+E+FKQNLP SV FYT
Sbjct: 2 GFTADQEALVNSSWESFKQNLPGYSVFFYT 31
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 673,543,606
Number of Sequences: 1393205
Number of extensions: 14484878
Number of successful extensions: 48905
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 40709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47300
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43201326735
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
