Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000138A_C01 KMC000138A_c01
(846 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174005.1| E3 ubiquitin ligase SCF complex subunit Cullin,... 144 2e-33
ref|NP_177125.1| E3 ubiquitin ligase SCF complex subunit Cullin,... 142 5e-33
ref|NP_003581.1| cullin 3 [Homo sapiens] gi|12643396|sp|Q13618|C... 90 4e-17
ref|NP_057925.1| cullin 3 [Mus musculus] gi|13124074|sp|Q9JLV5|C... 90 4e-17
gb|AAC36682.1| cullin 3 [Homo sapiens] 90 4e-17
>ref|NP_174005.1| E3 ubiquitin ligase SCF complex subunit Cullin, putative; protein id:
At1g26830.1 [Arabidopsis thaliana]
gi|25354602|pir||A86395 hypothetical protein T2P11.2
[imported] - Arabidopsis thaliana
gi|4262186|gb|AAD14503.1| Highly similar to cullin 3
[Arabidopsis thaliana]
gi|9295728|gb|AAF87034.1|AC006535_12 T24P13.25
[Arabidopsis thaliana]
Length = 732
Score = 144 bits (362), Expect = 2e-33
Identities = 82/154 (53%), Positives = 101/154 (65%), Gaps = 9/154 (5%)
Frame = -3
Query: 844 PMSDLKRCLQSLACVKGKNVLRKEPMSKDIAEDDAFLFHDQFTSQFFKVKIGTVVAQRES 665
P +DLKRCLQSLACVKGKNV++KEPMSKDI E+D F+ +D+FTS+F+KVKIGTVVAQ+E+
Sbjct: 589 PAADLKRCLQSLACVKGKNVIKKEPMSKDIGEEDLFVVNDKFTSKFYKVKIGTVVAQKET 648
Query: 664 EPE--NS*NSTASGRRP-------KATD*GSHREDNEI*ADSGS*PCCC*GHKPRCTSRF 512
EPE + R+P + + N I A+ + RF
Sbjct: 649 EPEKQETRQRVEEDRKPQIEAAIVRIMKSRKILDHNNIIAEV----------TKQLQPRF 698
Query: 511 LPNPVVIKKRIESLIEREFLERDKVDRKMYRYLA 410
L NP IKKRIESLIER+FLERD DRK+YRYLA
Sbjct: 699 LANPTEIKKRIESLIERDFLERDSTDRKLYRYLA 732
Score = 68.2 bits (165), Expect = 1e-10
Identities = 32/38 (84%), Positives = 37/38 (97%)
Frame = -1
Query: 648 ETRQRVEEDRKPQIEAAIVRIMKSRRTLDHDHVVAEVT 535
ETRQRVEEDRKPQIEAAIVRIMKSR+ LDH++++AEVT
Sbjct: 654 ETRQRVEEDRKPQIEAAIVRIMKSRKILDHNNIIAEVT 691
>ref|NP_177125.1| E3 ubiquitin ligase SCF complex subunit Cullin, putative; protein id:
At1g69670.1 [Arabidopsis thaliana]
gi|25354600|pir||E96718 probable cullin T6C23.13
[imported] - Arabidopsis thaliana
gi|12325193|gb|AAG52544.1|AC013289_11 putative cullin;
66460-68733 [Arabidopsis thaliana]
Length = 732
Score = 142 bits (359), Expect = 5e-33
Identities = 84/154 (54%), Positives = 103/154 (66%), Gaps = 9/154 (5%)
Frame = -3
Query: 844 PMSDLKRCLQSLACVKGKNVLRKEPMSKDIAEDDAFLFHDQFTSQFFKVKIGTVVAQRES 665
P DLKRCLQS+ACVKGKNVLRKEPMSK+IAE+D F+ +D+F S+F+KVKIGTVVAQ+E+
Sbjct: 589 PTPDLKRCLQSMACVKGKNVLRKEPMSKEIAEEDWFVVNDRFASKFYKVKIGTVVAQKET 648
Query: 664 EPE--NS*NSTASGRRPK-----ATD*GSHR--EDNEI*ADSGS*PCCC*GHKPRCTSRF 512
EPE + R+P+ S R + N I A+ + +RF
Sbjct: 649 EPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEV----------TKQLQTRF 698
Query: 511 LPNPVVIKKRIESLIEREFLERDKVDRKMYRYLA 410
L NP IKKRIESLIER+FLERD DRK+YRYLA
Sbjct: 699 LANPTEIKKRIESLIERDFLERDNTDRKLYRYLA 732
Score = 69.7 bits (169), Expect = 5e-11
Identities = 33/38 (86%), Positives = 37/38 (96%)
Frame = -1
Query: 648 ETRQRVEEDRKPQIEAAIVRIMKSRRTLDHDHVVAEVT 535
ETRQRVEEDRKPQIEAAIVRIMKSRR LDH++++AEVT
Sbjct: 654 ETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNIIAEVT 691
>ref|NP_003581.1| cullin 3 [Homo sapiens] gi|12643396|sp|Q13618|CUL3_HUMAN Cullin
homolog 3 (CUL-3) gi|3327048|dbj|BAA31592.1| KIAA0617
protein [Homo sapiens] gi|3639052|gb|AAC36304.1| cullin 3
[Homo sapiens] gi|24660078|gb|AAH39598.1| cullin 3 [Homo
sapiens]
Length = 768
Score = 90.1 bits (222), Expect = 4e-17
Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Frame = -3
Query: 844 PMSDLKRCLQSLACVKG-KNVLRKEPMSKDIAEDDAFLFHDQFTSQFFKVKIGTVVA-QR 671
P +L R LQSLAC K + VL KEP SK+I F +DQFTS+ +VKI TV A Q
Sbjct: 623 PERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQG 682
Query: 670 ESEPENS*NSTASGRRPKATD*GSHREDNEI*ADSGS*P-----CCC*GHKPRCTSRFLP 506
ES+PE R K D H + I S + +RFLP
Sbjct: 683 ESDPER------KETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLP 736
Query: 505 NPVVIKKRIESLIEREFLERDKVDRKMYRYLA 410
+PVVIKKRIE LIERE+L R DRK+Y Y+A
Sbjct: 737 SPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
Score = 57.0 bits (136), Expect = 3e-07
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = -1
Query: 678 RRGSLNQKTLETRQRVEEDRKPQIEAAIVRIMKSRRTLDHDHVVAEVT 535
++G + + ETRQ+V++DRK +IEAAIVRIMKSR+ + H+ +VAEVT
Sbjct: 680 KQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVT 727
>ref|NP_057925.1| cullin 3 [Mus musculus] gi|13124074|sp|Q9JLV5|CUL3_MOUSE Cullin
homolog 3 (CUL-3) gi|7108617|gb|AAF36500.1|AF129738_1
cullin 3 [Mus musculus] gi|20071136|gb|AAH27304.1| cullin
3 [Mus musculus]
Length = 768
Score = 90.1 bits (222), Expect = 4e-17
Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Frame = -3
Query: 844 PMSDLKRCLQSLACVKG-KNVLRKEPMSKDIAEDDAFLFHDQFTSQFFKVKIGTVVA-QR 671
P +L R LQSLAC K + VL KEP SK+I F +DQFTS+ +VKI TV A Q
Sbjct: 623 PERELVRALQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQG 682
Query: 670 ESEPENS*NSTASGRRPKATD*GSHREDNEI*ADSGS*P-----CCC*GHKPRCTSRFLP 506
ES+PE R K D H + I S + +RFLP
Sbjct: 683 ESDPER------KETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLP 736
Query: 505 NPVVIKKRIESLIEREFLERDKVDRKMYRYLA 410
+PVVIKKRIE LIERE+L R DRK+Y Y+A
Sbjct: 737 SPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
Score = 57.0 bits (136), Expect = 3e-07
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = -1
Query: 678 RRGSLNQKTLETRQRVEEDRKPQIEAAIVRIMKSRRTLDHDHVVAEVT 535
++G + + ETRQ+V++DRK +IEAAIVRIMKSR+ + H+ +VAEVT
Sbjct: 680 KQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVT 727
>gb|AAC36682.1| cullin 3 [Homo sapiens]
Length = 768
Score = 90.1 bits (222), Expect = 4e-17
Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Frame = -3
Query: 844 PMSDLKRCLQSLACVKG-KNVLRKEPMSKDIAEDDAFLFHDQFTSQFFKVKIGTVVA-QR 671
P +L R LQSLAC K + VL KEP SK+I F +DQFTS+ +VKI TV A Q
Sbjct: 623 PERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQG 682
Query: 670 ESEPENS*NSTASGRRPKATD*GSHREDNEI*ADSGS*P-----CCC*GHKPRCTSRFLP 506
ES+PE R K D H + I S + +RFLP
Sbjct: 683 ESDPER------KETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLP 736
Query: 505 NPVVIKKRIESLIEREFLERDKVDRKMYRYLA 410
+PVVIKKRIE LIERE+L R DRK+Y Y+A
Sbjct: 737 SPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768
Score = 57.0 bits (136), Expect = 3e-07
Identities = 27/48 (56%), Positives = 39/48 (81%)
Frame = -1
Query: 678 RRGSLNQKTLETRQRVEEDRKPQIEAAIVRIMKSRRTLDHDHVVAEVT 535
++G + + ETRQ+V++DRK +IEAAIVRIMKSR+ + H+ +VAEVT
Sbjct: 680 KQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVT 727
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 722,297,484
Number of Sequences: 1393205
Number of extensions: 15533568
Number of successful extensions: 40853
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 39272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40798
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
