Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000137A_C01 KMC000137A_c01
(886 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566273.1| expressed protein; protein id: At3g06130.1, sup... 42 0.009
ref|NP_197410.1| putative protein; protein id: At5g19090.1 [Arab... 42 0.009
dbj|BAB21184.1| hypothetical protein~similar to Arabidopsis thal... 37 0.40
ref|NP_173713.1| expressed protein; protein id: At1g23000.1 [Ara... 35 1.2
ref|NP_198121.1| putative protein; protein id: At5g27690.1 [Arab... 35 2.0
>ref|NP_566273.1| expressed protein; protein id: At3g06130.1, supported by cDNA:
gi_11908103, supported by cDNA: gi_13194807, supported
by cDNA: gi_15010767 [Arabidopsis thaliana]
gi|6862917|gb|AAF30306.1|AC018907_6 hypothetical protein
[Arabidopsis thaliana]
gi|11908104|gb|AAG41481.1|AF326899_1 unknown protein
[Arabidopsis thaliana]
gi|13194808|gb|AAK15566.1|AF349519_1 unknown protein
[Arabidopsis thaliana] gi|15010768|gb|AAK74043.1|
AT3g06130/F28L1_7 [Arabidopsis thaliana]
gi|23506209|gb|AAN31116.1| At3g06130/F28L1_7
[Arabidopsis thaliana]
Length = 473
Score = 42.4 bits (98), Expect = 0.009
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = -1
Query: 748 CILKFNIHFKCEGCEQKVKKLLQKID 671
C+LK NIH C+GC+QKVKK+LQKI+
Sbjct: 12 CVLKVNIH--CDGCKQKVKKILQKIE 35
>ref|NP_197410.1| putative protein; protein id: At5g19090.1 [Arabidopsis thaliana]
Length = 587
Score = 42.4 bits (98), Expect = 0.009
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = -1
Query: 748 CILKFNIHFKCEGCEQKVKKLLQKID 671
C+LK NIH C+GC+QKVKK+LQKI+
Sbjct: 12 CVLKVNIH--CDGCKQKVKKILQKIE 35
>dbj|BAB21184.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
F28L1.7 [Oryza sativa (japonica cultivar-group)]
gi|14090380|dbj|BAB55538.1| P0037C04.27 [Oryza sativa
(japonica cultivar-group)]
Length = 420
Score = 37.0 bits (84), Expect = 0.40
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -1
Query: 745 ILKFNIHFKCEGCEQKVKKLLQKIDVITVSAYIATGH 635
+L+ NIH C+GC+ KVKKLLQKI+ + A H
Sbjct: 16 VLRVNIH--CDGCKHKVKKLLQKIEGVYSVALDVDNH 50
>ref|NP_173713.1| expressed protein; protein id: At1g23000.1 [Arabidopsis thaliana]
Length = 358
Score = 35.4 bits (80), Expect = 1.2
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = -1
Query: 742 LKFNIHFKCEGCEQKVKKLLQKID 671
L+ NIH CEGC +KVKKLLQ+I+
Sbjct: 17 LRVNIH--CEGCNKKVKKLLQRIE 38
>ref|NP_198121.1| putative protein; protein id: At5g27690.1 [Arabidopsis thaliana]
gi|28392974|gb|AAO41922.1| unknown protein [Arabidopsis
thaliana] gi|28973191|gb|AAO63920.1| unknown protein
[Arabidopsis thaliana]
Length = 352
Score = 34.7 bits (78), Expect = 2.0
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = -1
Query: 745 ILKFNIHFKCEGCEQKVKKLLQKID 671
+L+ +IH CEGC++K+KK+L KID
Sbjct: 33 VLRVSIH--CEGCKRKIKKILSKID 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 665,006,327
Number of Sequences: 1393205
Number of extensions: 13235200
Number of successful extensions: 30027
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 28969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30022
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47939536764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
