Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000136A_C01 KMC000136A_c01
(744 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186759.1| unknown protein; protein id: At3g01100.1 [Arabi... 191 1e-47
gb|AAO00858.1| Unknown protein [Arabidopsis thaliana] 191 1e-47
pir||S51583 hypothetical protein HYP1 - Arabidopsis thaliana gi|... 189 3e-47
ref|NP_177104.1| unknown protein; protein id: At1g69450.1 [Arabi... 183 3e-45
ref|NP_172479.1| hypothetical protein; protein id: At1g10080.1 [... 140 2e-32
>ref|NP_186759.1| unknown protein; protein id: At3g01100.1 [Arabidopsis thaliana]
gi|498707|emb|CAA55187.1| HYP1 [Arabidopsis thaliana]
gi|6714478|gb|AAF26164.1|AC008261_21 unknown protein
[Arabidopsis thaliana]
Length = 468
Score = 191 bits (484), Expect = 1e-47
Identities = 85/129 (65%), Positives = 106/129 (81%)
Frame = -2
Query: 743 LIYFCLGYIIFRNQLLKVYVPRYETGGQFWPTVHHSTIFSLILMHVIAIGLFGLKKLPLA 564
L+Y+CLGYII+RNQLL VY +YETGG+FWP VH TIFSL+LMH+IA+GLFGLK+LP+A
Sbjct: 335 LVYYCLGYIIYRNQLLNVYAAKYETGGKFWPIVHSYTIFSLVLMHIIAVGLFGLKELPVA 394
Query: 563 SLLTLPLPILTLLFNEYCQTRFLPIFKDYPAECLIKKDRADPNDHNMSEFYDKMADAYND 384
S LT+PLP+LT+LF+ YCQ RFLP FK YP +CL+ KD+AD + NMSEFY ++ AY D
Sbjct: 395 SSLTIPLPVLTVLFSIYCQRRFLPNFKSYPTQCLVNKDKADEREQNMSEFYSELVVAYRD 454
Query: 383 PALNPIQYS 357
PAL+ Q S
Sbjct: 455 PALSASQDS 463
>gb|AAO00858.1| Unknown protein [Arabidopsis thaliana]
Length = 703
Score = 191 bits (484), Expect = 1e-47
Identities = 85/129 (65%), Positives = 106/129 (81%)
Frame = -2
Query: 743 LIYFCLGYIIFRNQLLKVYVPRYETGGQFWPTVHHSTIFSLILMHVIAIGLFGLKKLPLA 564
L+Y+CLGYII+RNQLL VY +YETGG+FWP VH TIFSL+LMH+IA+GLFGLK+LP+A
Sbjct: 570 LVYYCLGYIIYRNQLLNVYAAKYETGGKFWPIVHSYTIFSLVLMHIIAVGLFGLKELPVA 629
Query: 563 SLLTLPLPILTLLFNEYCQTRFLPIFKDYPAECLIKKDRADPNDHNMSEFYDKMADAYND 384
S LT+PLP+LT+LF+ YCQ RFLP FK YP +CL+ KD+AD + NMSEFY ++ AY D
Sbjct: 630 SSLTIPLPVLTVLFSIYCQRRFLPNFKSYPTQCLVNKDKADEREQNMSEFYSELVVAYRD 689
Query: 383 PALNPIQYS 357
PAL+ Q S
Sbjct: 690 PALSASQDS 698
>pir||S51583 hypothetical protein HYP1 - Arabidopsis thaliana
gi|499168|emb|CAA56145.1| HYP1 [Arabidopsis thaliana]
Length = 468
Score = 189 bits (481), Expect = 3e-47
Identities = 84/129 (65%), Positives = 106/129 (82%)
Frame = -2
Query: 743 LIYFCLGYIIFRNQLLKVYVPRYETGGQFWPTVHHSTIFSLILMHVIAIGLFGLKKLPLA 564
L+Y+CLGYII+RNQ+L VY +YETGG+FWP VH TIFSL+LMH+IA+GLFGLK+LP+A
Sbjct: 335 LVYYCLGYIIYRNQVLNVYAAKYETGGKFWPIVHSYTIFSLVLMHIIAVGLFGLKELPVA 394
Query: 563 SLLTLPLPILTLLFNEYCQTRFLPIFKDYPAECLIKKDRADPNDHNMSEFYDKMADAYND 384
S LT+PLP+LT+LF+ YCQ RFLP FK YP +CL+ KD+AD + NMSEFY ++ AY D
Sbjct: 395 SSLTIPLPVLTVLFSIYCQRRFLPNFKSYPTQCLVNKDKADEREQNMSEFYSELVVAYRD 454
Query: 383 PALNPIQYS 357
PAL+ Q S
Sbjct: 455 PALSASQDS 463
>ref|NP_177104.1| unknown protein; protein id: At1g69450.1 [Arabidopsis thaliana]
gi|12597787|gb|AAG60099.1|AC073178_10 unknown protein
[Arabidopsis thaliana]
Length = 646
Score = 183 bits (464), Expect = 3e-45
Identities = 84/144 (58%), Positives = 109/144 (75%), Gaps = 3/144 (2%)
Frame = -2
Query: 743 LIYFCLGYIIFRNQLLKVYVPRYETGGQFWPTVHHSTIFSLILMHVIAIGLFGLKKLPLA 564
L+YF L YII+RNQ + VY P+++TGG FWP +H++ IFSL+LM IAIGLF LKK+ LA
Sbjct: 499 LLYFILAYIIYRNQFMNVYAPKFDTGGMFWPMIHYTMIFSLVLMQAIAIGLFALKKMELA 558
Query: 563 SLLTLPLPILTLLFNEYCQTRFLPIFKDYPAECLIKKDRADPNDHNMSEFYDKMADAYND 384
+ L +PLP+ TLLFNE+C+ RF+PIF DYPAE L K+D+ D ND M EFY+ + AY D
Sbjct: 559 TYLLVPLPVFTLLFNEFCRKRFMPIFTDYPAEVLTKRDKEDRNDPTMPEFYNNLVSAYKD 618
Query: 383 PALNPIQYS---ERPDSHTSPLLA 321
PAL P+++S R DS TSPLL+
Sbjct: 619 PALLPLRFSGSGSRNDSLTSPLLS 642
>ref|NP_172479.1| hypothetical protein; protein id: At1g10080.1 [Arabidopsis
thaliana] gi|7487483|pir||T00627 hypothetical protein
T27I1.10 - Arabidopsis thaliana
gi|3540188|gb|AAC34338.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 509
Score = 140 bits (353), Expect = 2e-32
Identities = 65/119 (54%), Positives = 87/119 (72%)
Frame = -2
Query: 743 LIYFCLGYIIFRNQLLKVYVPRYETGGQFWPTVHHSTIFSLILMHVIAIGLFGLKKLPLA 564
LIYF Y+I++NQ++ VY+ +YE+GGQ+WP H++TIFSLIL VIA+G FGLK +A
Sbjct: 314 LIYFFFAYLIYKNQIINVYITKYESGGQYWPVFHNTTIFSLILSQVIALGFFGLKLSTVA 373
Query: 563 SLLTLPLPILTLLFNEYCQTRFLPIFKDYPAECLIKKDRADPNDHNMSEFYDKMADAYN 387
S T+PL +LTLLF+EYC+ RF PIF+ YPAE LI DRAD M E ++ + AY+
Sbjct: 374 SGFTIPLILLTLLFSEYCRQRFAPIFQKYPAEILIAMDRADEMTGKMEEIHNNLKVAYS 432
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 642,484,525
Number of Sequences: 1393205
Number of extensions: 13764975
Number of successful extensions: 36308
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 35194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36297
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
