Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000134A_C01 KMC000134A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197227.1| unknown protein; protein id: At5g17250.1 [Arabi... 54 6e-07
gb|AAM74245.1|AC074355_7 Putative protein similar to phosphatidy... 44 4e-04
ref|XP_203313.2| RIKEN cDNA 0710007C18 [Mus musculus] gi|2633082... 34 0.023
dbj|BAC26440.1| unnamed protein product [Mus musculus] 32 0.17
ref|NP_702324.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.48
>ref|NP_197227.1| unknown protein; protein id: At5g17250.1 [Arabidopsis thaliana]
gi|10177070|dbj|BAB10512.1| gene_id:MKP11.10~unknown
protein [Arabidopsis thaliana]
Length = 884
Score = 53.5 bits (127), Expect = 6e-07
Identities = 31/60 (51%), Positives = 41/60 (67%)
Frame = -1
Query: 412 LYNILGS*PATMTTSPIVCVTIPQGRHPHWFGVYLLRSLVFDVFNLILTDVLICLASIYY 233
+Y + G AT T+ I+CVTI Q RH +G++ + VFDV +LILTD+LICLAS YY
Sbjct: 826 MYMLFGVISATTVTATILCVTI-QRRHLMVWGLFAPK-FVFDVVDLILTDLLICLASAYY 883
>gb|AAM74245.1|AC074355_7 Putative protein similar to phosphatidylinositol glycan [Oryza
sativa (japonica cultivar-group)]
Length = 692
Score = 44.3 bits (103), Expect = 4e-04
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = -1
Query: 412 LYNILGS*PATMTTSPIVCVTIPQGRHPHWFGVYLLRSLVFDVFNLILTDVLICLASIYY 233
+Y ++ S T+T I+CVTI Q RH +G++ + VFD L+LTD+L+ LASIYY
Sbjct: 637 MYGLITSITTTLT---IICVTI-QRRHLMVWGLFAPK-YVFDAIGLLLTDLLVVLASIYY 691
>ref|XP_203313.2| RIKEN cDNA 0710007C18 [Mus musculus] gi|26330824|dbj|BAC29142.1|
unnamed protein product [Mus musculus]
Length = 393
Score = 34.3 bits (77), Expect(2) = 0.023
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 160 CVCVCLCLFSNLMISVGGQPSLHRNS 237
CVCVC+C F + +S GQP R S
Sbjct: 359 CVCVCICRFGGMYMSACGQPGFLRQS 384
Score = 23.1 bits (48), Expect(2) = 0.023
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 143 INIILSVCVCVCV 181
++ L VCVCVCV
Sbjct: 350 LSFTLCVCVCVCV 362
>dbj|BAC26440.1| unnamed protein product [Mus musculus]
Length = 117
Score = 32.3 bits (72), Expect(2) = 0.17
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 160 CVCVCLCLFSNLMISVGGQPSLH 228
CVCVC+C++ N+ + V GQ +H
Sbjct: 30 CVCVCVCVYVNVSMYVYGQTHIH 52
Score = 22.3 bits (46), Expect(2) = 0.17
Identities = 7/13 (53%), Positives = 9/13 (68%)
Frame = +2
Query: 143 INIILSVCVCVCV 181
+ + VCVCVCV
Sbjct: 23 VRVCTCVCVCVCV 35
>ref|NP_702324.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497506|gb|AAN37048.1|AE014823_28 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1001
Score = 33.9 bits (76), Expect = 0.48
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 322 FGVYLLRSLVFDVFNLILTDVLICLASIYYFDEAKVDPQLKS*GC*IDTNTHTHTQNDIY 143
F +Y++R + + F L VL C +I+Y+++ P S I N + H N Y
Sbjct: 495 FKLYIMRIFLLNYFVLFFLSVLFCCVNIFYYNQYCTSPGKDSHNNNIYENLNNHIYNSSY 554
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,854,483
Number of Sequences: 1393205
Number of extensions: 7057303
Number of successful extensions: 17576
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17021
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
