Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000132A_C02 KMC000132A_c02
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK91822.1|AF272759_1 kinesin heavy chain [Zea mays] 47 2e-04
gb|AAK91812.1|AF272749_1 kinesin heavy chain [Zea mays] 44 0.002
ref|NP_199064.1| kinesin heavy chain-like protein; protein id: A... 41 0.014
ref|NP_201432.1| kinesin heavy chain DNA binding protein-like; p... 32 0.016
gb|ZP_00042741.1| hypothetical protein [Magnetococcus sp. MC-1] 35 0.78
>gb|AAK91822.1|AF272759_1 kinesin heavy chain [Zea mays]
Length = 897
Score = 47.0 bits (110), Expect = 2e-04
Identities = 28/91 (30%), Positives = 47/91 (50%), Gaps = 14/91 (15%)
Frame = -3
Query: 411 KERQILSTHAEEEIKIW*NEPIFEMVPSFELEAKEFTTQLAHRLWTDIEDMEHFTKSGT- 235
+ER++L ++ + I E ++ L +K Q+A RLWT+ D+EH +S +
Sbjct: 796 REREMLCRQMQKRLTIQERESLYTKW-GVSLSSKRRRLQVARRLWTETRDLEHVRESASL 854
Query: 234 -------------FKEIFGLNFAPQFSSRKS 181
+E+FGL+FAPQ S+R+S
Sbjct: 855 VARLIGLLEPGKALREMFGLSFAPQQSTRRS 885
>gb|AAK91812.1|AF272749_1 kinesin heavy chain [Zea mays]
Length = 766
Score = 43.5 bits (101), Expect = 0.002
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 14/85 (16%)
Frame = -3
Query: 411 KERQILSTHAEEEIKIW*NEPIFEMVPSFELEAKEFTTQLAHRLWTDIEDMEHFTKSGT- 235
+ER++L+ ++ + E ++ L++K+ Q+A RLWT+ ED+EH +S +
Sbjct: 662 REREMLARQMQKRLTAEERERLYTKW-GISLDSKKRKLQVARRLWTEAEDLEHVRESASL 720
Query: 234 -------------FKEIFGLNFAPQ 199
+E+FGL+FAPQ
Sbjct: 721 VAKLIGLQEPGQVLREMFGLSFAPQ 745
>ref|NP_199064.1| kinesin heavy chain-like protein; protein id: At5g42490.1
[Arabidopsis thaliana] gi|9759485|dbj|BAB10490.1| kinesin
heavy chain-like protein [Arabidopsis thaliana]
Length = 1087
Score = 40.8 bits (94), Expect = 0.014
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 14/62 (22%)
Frame = -3
Query: 324 ELEAKEFTTQLAHRLWTDIEDMEHFTKSGTF--------------KEIFGLNFAPQFSSR 187
E+ +K+ + Q+AH+LWT+ +DM+H +S + KE+FGL+ P+ +
Sbjct: 1010 EVNSKQRSLQVAHKLWTNTQDMDHIKESASLVAKLLGFVEPSRMPKEMFGLSLLPRTENV 1069
Query: 186 KS 181
KS
Sbjct: 1070 KS 1071
>ref|NP_201432.1| kinesin heavy chain DNA binding protein-like; protein id: At5g66310.1
[Arabidopsis thaliana] gi|10177425|dbj|BAB10710.1|
kinesin heavy chain DNA binding protein-like [Arabidopsis
thaliana]
Length = 1037
Score = 31.6 bits (70), Expect(2) = 0.016
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 386 MQKRKSKSGRMNLYLRWCLPLSLKQRSLQL 297
MQ++ SK R NL+LRW + L+ R +QL
Sbjct: 969 MQRKLSKEERENLFLRWGIGLNTNHRRVQL 998
Score = 28.1 bits (61), Expect(2) = 0.016
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 297 QLAHRLWTDIEDMEHFTKSGT 235
QLA RLW+D +DM H +S +
Sbjct: 997 QLARRLWSDYKDMGHVRESAS 1017
>gb|ZP_00042741.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 602
Score = 35.0 bits (79), Expect = 0.78
Identities = 19/56 (33%), Positives = 30/56 (52%)
Frame = +1
Query: 211 VESKYLLKSSTLCKVFHVLYVSPQAMSQLSCKLLCFKLKGRHHLKYRFILPDFDFL 378
++ +LLK L V H+L + P ++ ++ L GR HL + LPD+DFL
Sbjct: 129 IDQAHLLKGDNLRLVQHILAIEP-----VNGVMVQLVLSGRRHLHEQLQLPDYDFL 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,720,772
Number of Sequences: 1393205
Number of extensions: 10104568
Number of successful extensions: 21180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21175
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
