Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000129A_C01 KMC000129A_c01
(941 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_296711.1| tyrosyl-tRNA synthetase [Chlamydia muridarum] g... 33 6.3
gb|ZP_00002883.1| hypothetical protein [Nitrosomonas europaea] 33 6.3
gb|EAA20550.1| hypothetical protein [Plasmodium yoelii yoelii] 33 8.2
>ref|NP_296711.1| tyrosyl-tRNA synthetase [Chlamydia muridarum]
gi|14195229|sp|Q9PKX8|SYY_CHLMU Tyrosyl-tRNA synthetase
(Tyrosine--tRNA ligase) (TyrRS) gi|11271068|pir||H81713
tyrosyl-tRNA synthetase TC0332 [imported] - Chlamydia
muridarum (strain Nigg) gi|7190374|gb|AAF39195.1|
tyrosyl-tRNA synthetase [Chlamydia muridarum]
Length = 412
Score = 33.1 bits (74), Expect = 6.3
Identities = 15/31 (48%), Positives = 19/31 (60%)
Frame = +3
Query: 333 KQSIYRRVGISIKEFQYLWKISSDFNYIFQH 425
KQ +Y GIS EF YL S DF ++F+H
Sbjct: 146 KQRVYSEEGISYTEFSYLLLQSYDFAHLFKH 176
>gb|ZP_00002883.1| hypothetical protein [Nitrosomonas europaea]
Length = 325
Score = 33.1 bits (74), Expect = 6.3
Identities = 20/76 (26%), Positives = 38/76 (49%), Gaps = 2/76 (2%)
Frame = -2
Query: 808 AGESQSSSWPSVRMSIPSHLMAIKCHPMATCSCMVLLFDDQRL--WWLIFSINRAHVILL 635
A E QS WPS+ +++P L+ + + T + +++ F + W +I + + L
Sbjct: 103 AYEIQSRMWPSLAIALPVFLLGLLTY--ITFALVMIFFRATYVDFWGVILCVMLMSISSL 160
Query: 634 FIYPGRAFLINRFWDM 587
F G FLI++ W +
Sbjct: 161 FYIIGGQFLISKLWHL 176
>gb|EAA20550.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 746
Score = 32.7 bits (73), Expect = 8.2
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = -1
Query: 455 FFQKNYL*QCVLKNVIEITADLP*ILKFFYRYANSSIDALFIL*KARFTVIV--QILYLL 282
F ++N L +C+ KNV+ + D+ FF Y N ++ + + + R + V Q +Y+
Sbjct: 108 FDKQNELIKCIYKNVVNVYLDM-----FFLLYTNDEVEYKYNIIQMRINICVEKQKIYIS 162
Query: 281 SG-CLV 267
SG CL+
Sbjct: 163 SGECLL 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 795,123,070
Number of Sequences: 1393205
Number of extensions: 17642619
Number of successful extensions: 36467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36462
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52691756080
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
