Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000126A_C01 KMC000126A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_507869.1| UNCoordinated locomotion UNC-51, serine/threoni... 38 0.10
ref|NP_173240.1| nuclear poly(A) polymerase, putative; protein i... 35 0.51
ref|XP_224750.1| similar to ebiP4655 [Anopheles gambiae str. PES... 35 0.51
pir||B86315 F2H15.20 protein - Arabidopsis thaliana gi|9665075|g... 35 0.51
ref|NP_491403.1| RNA recognition motif containing protein (109.8... 35 0.66
>ref|NP_507869.1| UNCoordinated locomotion UNC-51, serine/threonine kinase (94.9 kD)
(unc-51) [Caenorhabditis elegans]
gi|2499617|sp|Q23023|UN51_CAEEL Serine/threonine-protein
kinase unc-51 gi|11346405|pir||T43631 serine/threonine
kinase - Caenorhabditis elegans
gi|558375|emb|CAA86114.1| serine/threonine kinase
[Caenorhabditis elegans] gi|6425373|emb|CAB60406.1| C.
elegans UNC-51 protein (corresponding sequence Y60A3A.1)
[Caenorhabditis elegans] gi|1091677|prf||2021343A
Ser/Thr kinase
Length = 856
Score = 37.7 bits (86), Expect = 0.10
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Frame = -3
Query: 479 NSSSCVXEEPVVSKTETTCSTNLYSSGVLEELEPAELTAPLLSG---------TPAPVP 330
N+S EP + K +TTCST+ SS V+EE E L P SG TPA VP
Sbjct: 573 NNSPTAPTEPFIIKNQTTCSTSSTSSSVVEEEEAMSL--PFASGSHLAAGFKKTPAEVP 629
>ref|NP_173240.1| nuclear poly(A) polymerase, putative; protein id: At1g17980.1
[Arabidopsis thaliana]
Length = 714
Score = 35.4 bits (80), Expect = 0.51
Identities = 27/99 (27%), Positives = 45/99 (45%)
Frame = -3
Query: 569 EPDELENDIEDKNRVKDFGMNTXTRNLDSSNSSSCVXEEPVVSKTETTCSTNLYSSGVLE 390
E +ELE + N+V + S+ + + + E T + + + +E
Sbjct: 627 ETEELEESFDFGNQVIE----------QISHKVAVLSATATIPPFEATSNGSPFPYEAVE 676
Query: 389 ELEPAELTAPLLSGTPAPVPERKPLIRFNFTSLGKAADK 273
ELE P + P+ V +RKP+I+ +FTSLGK K
Sbjct: 677 ELEVLPTRQPDAAHRPS-VQQRKPIIKLSFTSLGKTNGK 714
>ref|XP_224750.1| similar to ebiP4655 [Anopheles gambiae str. PEST] [Rattus norvegicus]
Length = 2668
Score = 35.4 bits (80), Expect = 0.51
Identities = 19/64 (29%), Positives = 34/64 (52%)
Frame = -3
Query: 557 LENDIEDKNRVKDFGMNTXTRNLDSSNSSSCVXEEPVVSKTETTCSTNLYSSGVLEELEP 378
LE+++ + N D + ++DS+N++ C+ TETT ST+ + ++ELEP
Sbjct: 1541 LEHELTNSNNTADCLASQKAESIDSTNATDCLASVG----TETTMSTHPADNMAMDELEP 1596
Query: 377 AELT 366
T
Sbjct: 1597 THST 1600
Score = 35.4 bits (80), Expect = 0.51
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -3
Query: 557 LENDIEDKNRVKDFGMNTXTRNLDSSNSSSCVXEEPVVSKTETTCSTNLYSSGVLEELEP 378
LE+++ + N D + ++DS+N+S C+ TETT ST+ + +ELEP
Sbjct: 1897 LEHELTNSNNTADCLASQKAESIDSTNASDCLAS----VGTETTMSTHPADNMATDELEP 1952
Query: 377 AELT 366
T
Sbjct: 1953 THST 1956
Score = 35.4 bits (80), Expect = 0.51
Identities = 19/64 (29%), Positives = 34/64 (52%)
Frame = -3
Query: 557 LENDIEDKNRVKDFGMNTXTRNLDSSNSSSCVXEEPVVSKTETTCSTNLYSSGVLEELEP 378
LE+++ + N D + ++DS+N++ C+ TETT ST+ + ++ELEP
Sbjct: 1184 LEHELTNSNNTADCLASQKAESIDSTNATDCLASVG----TETTMSTHPADNMAMDELEP 1239
Query: 377 AELT 366
T
Sbjct: 1240 THST 1243
>pir||B86315 F2H15.20 protein - Arabidopsis thaliana
gi|9665075|gb|AAF97277.1|AC034106_20 Strong similarity
to nuclear poly(A) polymerase from Arabidopsis thaliana
gb|AF255297 and contains a Nucleotidyltransferase
PF|01909 domain. ESTs gb|AV536592, gb|AV553256,
gb|AV561630, gb|AV532289 come from this gene
gi|29029092|gb|AAO64925.1| At1g17980 [Arabidopsis
thaliana]
Length = 713
Score = 35.4 bits (80), Expect = 0.51
Identities = 27/99 (27%), Positives = 45/99 (45%)
Frame = -3
Query: 569 EPDELENDIEDKNRVKDFGMNTXTRNLDSSNSSSCVXEEPVVSKTETTCSTNLYSSGVLE 390
E +ELE + N+V + S+ + + + E T + + + +E
Sbjct: 626 ETEELEESFDFGNQVIE----------QISHKVAVLSATATIPPFEATSNGSPFPYEAVE 675
Query: 389 ELEPAELTAPLLSGTPAPVPERKPLIRFNFTSLGKAADK 273
ELE P + P+ V +RKP+I+ +FTSLGK K
Sbjct: 676 ELEVLPTRQPDAAHRPS-VQQRKPIIKLSFTSLGKTNGK 713
>ref|NP_491403.1| RNA recognition motif containing protein (109.8 kD) [Caenorhabditis
elegans] gi|13324941|gb|AAK18922.1| Hypothetical protein
D1007.7 [Caenorhabditis elegans]
Length = 988
Score = 35.0 bits (79), Expect = 0.66
Identities = 28/83 (33%), Positives = 37/83 (43%), Gaps = 2/83 (2%)
Frame = -3
Query: 563 DELENDIEDKNRVKDFGMNTXTRNLD--SSNSSSCVXEEPVVSKTETTCSTNLYSSGVLE 390
D+ +D D R R+ D + S S EEP V KT T SS L+
Sbjct: 883 DDRRDDRRDDRRESRRRSPRSPRSPDRRTRRSPSYEREEPPVKKTSVEEET--VSSTTLD 940
Query: 389 ELEPAELTAPLLSGTPAPVPERK 321
EL+P+ P+ + PAP PE K
Sbjct: 941 ELKPSVEPTPVPAPIPAPAPELK 963
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,625,197
Number of Sequences: 1393205
Number of extensions: 8902601
Number of successful extensions: 27191
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27102
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
