Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000123A_C01 KMC000123A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700550.1| hypothetical protein [Plasmodium falciparum 3D7... 32 6.2
ref|NP_187545.1| hypothetical protein; protein id: At3g09340.1 [... 32 6.2
>ref|NP_700550.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23494940|gb|AAN35274.1|AE014830_18 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1073
Score = 32.0 bits (71), Expect = 6.2
Identities = 19/49 (38%), Positives = 27/49 (54%)
Frame = +2
Query: 305 FGDDQCHVDYYIIQYFTDDNNSNSSFCFQDRNPFAKTIPCNAFSNNFTL 451
FGD + + D ++F DD+NSN + QD+ K I C S N+TL
Sbjct: 445 FGDHKIYEDKKNCEHFGDDDNSNIIYISQDK--MNKNIDCQD-STNYTL 490
>ref|NP_187545.1| hypothetical protein; protein id: At3g09340.1 [Arabidopsis
thaliana] gi|6478926|gb|AAF14031.1|AC011436_15
hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 32.0 bits (71), Expect = 6.2
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
Frame = +2
Query: 311 DDQCHVDYYIIQYFTDDNNSNSSFCF-QDRNPFAKTIPCNAFSNNFTLIPNNTKFHQGNR 487
DD CHVD + Y DD++SN+SF Q+ + F ++ + P F QG
Sbjct: 16 DDDCHVD---VSYVNDDDDSNASFSLSQNDSAFWPQSYRHSVDLLTGVTPPMVSFIQGRS 72
Query: 488 VIFSFFSS 511
SF SS
Sbjct: 73 TETSFSSS 80
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,909,278
Number of Sequences: 1393205
Number of extensions: 11352643
Number of successful extensions: 24912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24897
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
