Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000122A_C02 KMC000122A_c02
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97517.1| gene_id:F24B18.6~unknown protein [Arabidopsis th... 54 1e-06
ref|NP_200255.2| unknown protein; protein id: At5g54440.1, suppo... 54 1e-06
gb|AAA84544.1| psbA peptide 38 0.13
sp|P04998|PSBA_MEDSA Photosystem Q(B) protein (32 kDa thylakoid ... 38 0.13
sp|P18290|PSBA_BRANA Photosystem Q(B) protein (32 kDa thylakoid ... 38 0.13
>dbj|BAA97517.1| gene_id:F24B18.6~unknown protein [Arabidopsis thaliana]
Length = 1280
Score = 54.3 bits (129), Expect = 1e-06
Identities = 21/31 (67%), Positives = 27/31 (86%)
Frame = -3
Query: 634 VDEANIRCKPAGPHLICVLPPALSSSFCIPV 542
V+EAN+ P+GPHL+CVLPP LSSS+C+PV
Sbjct: 1249 VEEANVSSNPSGPHLVCVLPPLLSSSYCLPV 1279
>ref|NP_200255.2| unknown protein; protein id: At5g54440.1, supported by cDNA:
gi_20259378 [Arabidopsis thaliana]
Length = 829
Score = 54.3 bits (129), Expect = 1e-06
Identities = 21/31 (67%), Positives = 27/31 (86%)
Frame = -3
Query: 634 VDEANIRCKPAGPHLICVLPPALSSSFCIPV 542
V+EAN+ P+GPHL+CVLPP LSSS+C+PV
Sbjct: 798 VEEANVSSNPSGPHLVCVLPPLLSSSYCLPV 828
>gb|AAA84544.1| psbA peptide
Length = 27
Score = 37.7 bits (86), Expect = 0.13
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 425 DAHNSPLDLAAVEAPSING 369
+AHN PLDLAAVEAPSING
Sbjct: 9 NAHNFPLDLAAVEAPSING 27
>sp|P04998|PSBA_MEDSA Photosystem Q(B) protein (32 kDa thylakoid membrane protein)
(Photosystem II protein D1) gi|81858|pir||A25580
photosystem II protein D1 precursor - alfalfa
chloroplast gi|11736|emb|CAA28646.1| Q(B) polypeptide
(AA 1-353) [Medicago sativa]
Length = 353
Score = 37.7 bits (86), Expect = 0.13
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 425 DAHNSPLDLAAVEAPSING 369
+AHN PLDLAAVEAPSING
Sbjct: 335 NAHNFPLDLAAVEAPSING 353
>sp|P18290|PSBA_BRANA Photosystem Q(B) protein (32 kDa thylakoid membrane protein)
(Photosystem II protein D1) (Triazine-resistance
protein) gi|336422|gb|AAA84447.1| triazine-resistance
gi|225583|prf||1306442A gene psbA
Length = 353
Score = 37.7 bits (86), Expect = 0.13
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 425 DAHNSPLDLAAVEAPSING 369
+AHN PLDLAAVEAPSING
Sbjct: 335 NAHNFPLDLAAVEAPSING 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,052,847
Number of Sequences: 1393205
Number of extensions: 11112514
Number of successful extensions: 29209
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 27963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29155
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
