Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000121A_C02 KMC000121A_c02
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G96662 probable aminopeptidase F24D7.4 [imported] - Arabido... 116 4e-44
ref|NP_176563.1| putative aminopeptidase; protein id: At1g63770.... 116 4e-44
gb|AAN72085.1| putative aminopeptidase [Arabidopsis thaliana] 116 4e-44
ref|ZP_00086015.1| hypothetical protein [Pseudomonas fluorescens... 74 5e-22
ref|NP_793562.1| aminopeptidase N [Pseudomonas syringae pv. toma... 71 2e-21
>pir||G96662 probable aminopeptidase F24D7.4 [imported] - Arabidopsis thaliana
Length = 964
Score = 116 bits (291), Expect(3) = 4e-44
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = -1
Query: 572 SDIPGNVENVRKLLSHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYTFLGEIVLQ 399
SDIPGNVENV+KLL HPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGY FLG+IV+Q
Sbjct: 850 SDIPGNVENVKKLLDHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGDIVVQ 907
Score = 59.7 bits (143), Expect(3) = 4e-44
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = -2
Query: 424 RFWEKLCCKLDQINPQVASRMVSAFSRWRRYDEDRPKLAKAQ 299
+F + +LD++NPQVASRMVSAFSRW+RYDE R LAKAQ
Sbjct: 899 KFLGDIVVQLDKLNPQVASRMVSAFSRWKRYDETRQGLAKAQ 940
Score = 44.3 bits (103), Expect(3) = 4e-44
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3
Query: 318 QSLPRLRLEKIKSINGLSENVFEIASKSLAA 226
Q L + +LE I S NGLSENVFEIASKSLAA
Sbjct: 934 QGLAKAQLEMIMSANGLSENVFEIASKSLAA 964
>ref|NP_176563.1| putative aminopeptidase; protein id: At1g63770.1 [Arabidopsis
thaliana] gi|12324950|gb|AAG52429.1|AC011622_17 putative
aminopeptidase; 4537-10989 [Arabidopsis thaliana]
Length = 964
Score = 116 bits (291), Expect(3) = 4e-44
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = -1
Query: 572 SDIPGNVENVRKLLSHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYTFLGEIVLQ 399
SDIPGNVENV+KLL HPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGY FLG+IV+Q
Sbjct: 850 SDIPGNVENVKKLLDHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGDIVVQ 907
Score = 59.7 bits (143), Expect(3) = 4e-44
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = -2
Query: 424 RFWEKLCCKLDQINPQVASRMVSAFSRWRRYDEDRPKLAKAQ 299
+F + +LD++NPQVASRMVSAFSRW+RYDE R LAKAQ
Sbjct: 899 KFLGDIVVQLDKLNPQVASRMVSAFSRWKRYDETRQGLAKAQ 940
Score = 44.3 bits (103), Expect(3) = 4e-44
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3
Query: 318 QSLPRLRLEKIKSINGLSENVFEIASKSLAA 226
Q L + +LE I S NGLSENVFEIASKSLAA
Sbjct: 934 QGLAKAQLEMIMSANGLSENVFEIASKSLAA 964
>gb|AAN72085.1| putative aminopeptidase [Arabidopsis thaliana]
Length = 883
Score = 116 bits (291), Expect(3) = 4e-44
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = -1
Query: 572 SDIPGNVENVRKLLSHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYTFLGEIVLQ 399
SDIPGNVENV+KLL HPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGY FLG+IV+Q
Sbjct: 769 SDIPGNVENVKKLLDHPAFDLRNPNKVYSLIGGFCGSPVNFHAKDGSGYKFLGDIVVQ 826
Score = 59.7 bits (143), Expect(3) = 4e-44
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = -2
Query: 424 RFWEKLCCKLDQINPQVASRMVSAFSRWRRYDEDRPKLAKAQ 299
+F + +LD++NPQVASRMVSAFSRW+RYDE R LAKAQ
Sbjct: 818 KFLGDIVVQLDKLNPQVASRMVSAFSRWKRYDETRQGLAKAQ 859
Score = 44.3 bits (103), Expect(3) = 4e-44
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3
Query: 318 QSLPRLRLEKIKSINGLSENVFEIASKSLAA 226
Q L + +LE I S NGLSENVFEIASKSLAA
Sbjct: 853 QGLAKAQLEMIMSANGLSENVFEIASKSLAA 883
>ref|ZP_00086015.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 885
Score = 73.6 bits (179), Expect(3) = 5e-22
Identities = 31/59 (52%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Frame = -1
Query: 572 SDIPGNVENVRKLLSHPAFDLRNPNKVYSLIGGFCG-SPVNFHAKDGSGYTFLGEIVLQ 399
S +PG +E V+ L+ HPAF+++NPNKV +L+G F G + +NFHA DGSGY FL ++V++
Sbjct: 771 STLPGGLERVKALMQHPAFNIKNPNKVRALVGAFAGQNLINFHAADGSGYRFLADLVIE 829
Score = 43.1 bits (100), Expect(3) = 5e-22
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = -2
Query: 424 RFWEKLCCKLDQINPQVASRMVSAFSRWRRYDEDRPKLAKAQ 299
RF L +L+ NPQ+ASR ++ +RWR+YD R L KA+
Sbjct: 821 RFLADLVIELNGFNPQIASRQLAPLTRWRKYDSARQALMKAE 862
Score = 29.3 bits (64), Expect(3) = 5e-22
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = -3
Query: 318 QSLPRLRLEKIKSINGLSENVFEIASKSLA 229
Q+L + LE+I + LS +V+E+ SKSLA
Sbjct: 856 QALMKAELERILASGQLSSDVYEVVSKSLA 885
>ref|NP_793562.1| aminopeptidase N [Pseudomonas syringae pv. tomato str. DC3000]
gi|28854192|gb|AAO57257.1| aminopeptidase N [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 888
Score = 70.9 bits (172), Expect(3) = 2e-21
Identities = 30/56 (53%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Frame = -1
Query: 563 PGNVENVRKLLSHPAFDLRNPNKVYSLIGGFCG-SPVNFHAKDGSGYTFLGEIVLQ 399
PG ++ V++L+ HPAF ++NPNKV +LIG F G + +NFHA DGSGY FL ++V++
Sbjct: 776 PGGLQRVQELMKHPAFSIKNPNKVRALIGAFAGQNLINFHAADGSGYRFLADLVIE 831
Score = 44.3 bits (103), Expect(3) = 2e-21
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = -2
Query: 424 RFWEKLCCKLDQINPQVASRMVSAFSRWRRYDEDRPKLAKAQ 299
RF L +L+ +NPQ+ASR ++ +RWR+YD R L KA+
Sbjct: 823 RFLADLVIELNALNPQIASRQLAPLTRWRKYDSARQALMKAE 864
Score = 28.9 bits (63), Expect(3) = 2e-21
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = -3
Query: 318 QSLPRLRLEKIKSINGLSENVFEIASKSLA 229
Q+L + LE+I + LS +V+E+ SKSLA
Sbjct: 858 QALMKAELERILASGKLSADVYEVVSKSLA 887
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,633,927
Number of Sequences: 1393205
Number of extensions: 10789445
Number of successful extensions: 23712
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 23048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23676
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
