Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000119A_C01 KMC000119A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195573.1| putative protein; protein id: At4g38610.1 [Arab... 242 2e-63
ref|NP_195908.1| putative protein; protein id: At5g02880.1 [Arab... 110 1e-23
ref|NP_004229.1| thyroid hormone receptor interactor 12; thyroid... 105 4e-22
ref|XP_237347.1| similar to thyroid hormone receptor interactor ... 99 3e-20
gb|EAA01202.1| ebiP9798 [Anopheles gambiae str. PEST] 88 6e-17
>ref|NP_195573.1| putative protein; protein id: At4g38610.1 [Arabidopsis thaliana]
gi|7485882|pir||T05689 hypothetical protein F20M13.170 -
Arabidopsis thaliana gi|4467148|emb|CAB37517.1| putative
protein [Arabidopsis thaliana] gi|7270844|emb|CAB80525.1|
putative protein [Arabidopsis thaliana]
Length = 1083
Score = 242 bits (618), Expect = 2e-63
Identities = 131/181 (72%), Positives = 149/181 (81%)
Frame = +2
Query: 8 KVSCYSSGMQEDTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIHGSSVNGPVRHK 187
K S +SG QED + +IS REKLL DQPELLQQFG+DLLPVL+QI+GSSVNG +RHK
Sbjct: 550 KSSPSTSGKQED----ILKISPREKLLGDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHK 605
Query: 188 CLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTF 367
CLSVIGKLMYFS++EMIQSL+ TNISSFLAGVLAWKDP VLVPALQ+AEILMEKLP TF
Sbjct: 606 CLSVIGKLMYFSSSEMIQSLIGDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETF 665
Query: 368 SKIFVREGVVHAVDQLILAGKSTNITTQASSAEKDNGSVSGTSSRSRRYRLRSGNSNPDT 547
SK+FVREGVVHAVDQL+L GK ++ AS +KDN V G S+RSRRYR RS N+N D
Sbjct: 666 SKVFVREGVVHAVDQLVLVGKPSH----ASPTDKDNDCVPG-SARSRRYRRRSSNANSDG 720
Query: 548 N 550
N
Sbjct: 721 N 721
>ref|NP_195908.1| putative protein; protein id: At5g02880.1 [Arabidopsis thaliana]
gi|11357909|pir||T48309 hypothetical protein F9G14.190 -
Arabidopsis thaliana gi|7413563|emb|CAB86042.1| putative
protein [Arabidopsis thaliana]
Length = 1502
Score = 110 bits (275), Expect = 1e-23
Identities = 60/134 (44%), Positives = 85/134 (62%)
Frame = +2
Query: 68 SAREKLLNDQPELLQQFGMDLLPVLMQIHGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSL 247
S +E L +QP+LLQQFG D+LPV++Q+ S N V + CLS I KL S + I L
Sbjct: 423 SEKESFLVNQPDLLQQFGRDMLPVMIQVLNSGANVYVSYGCLSAIHKLTCLSKSGDIVEL 482
Query: 248 LSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKIFVREGVVHAVDQLILAG 427
L TN+SS LAG+L+ KD HV+V ALQ+AE+L+EK TF F++EGV A++ L+ +
Sbjct: 483 LKNTNMSSVLAGILSRKDHHVIVVALQVAEVLLEKYRDTFLNSFIKEGVFFAIEALLSSD 542
Query: 428 KSTNITTQASSAEK 469
+ A ++K
Sbjct: 543 RGQQNQGSADLSQK 556
>ref|NP_004229.1| thyroid hormone receptor interactor 12; thyroid receptor interacting
protein 12 [Homo sapiens] gi|2499839|sp|Q14669|TRIB_HUMAN
Thyroid receptor interacting protein 12 (TRIP12)
gi|460711|dbj|BAA05837.1| KIAA0045 [Homo sapiens]
Length = 1992
Score = 105 bits (262), Expect = 4e-22
Identities = 63/167 (37%), Positives = 97/167 (57%)
Frame = +2
Query: 5 SKVSCYSSGMQEDTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIHGSSVNGPVRH 184
S S YS ++D AR +L+ + PEL + F L VL +++ SS VRH
Sbjct: 806 SNTSGYSESKKDD---------ARAQLMKEDPELAKSFIKTLFGVLYEVYSSSAGPAVRH 856
Query: 185 KCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGT 364
KCL I +++YF+ AE+++ +L +SS +A +L+ +D ++V ALQ+AEILM+KLP
Sbjct: 857 KCLRAILRIIYFADAELLKDVLKNHAVSSHIASMLSSQDLKIVVGALQMAEILMQKLPDI 916
Query: 365 FSKIFVREGVVHAVDQLILAGKSTNITTQASSAEKDNGSVSGTSSRS 505
FS F REGV+H V LA + +T+ + +GS+ T+S S
Sbjct: 917 FSVYFRREGVMHQVKH--LAESESLLTSPPKACTNGSGSMGSTTSVS 961
>ref|XP_237347.1| similar to thyroid hormone receptor interactor 12; thyroid receptor
interacting protein 12 [Homo sapiens] [Rattus
norvegicus]
Length = 602
Score = 99.4 bits (246), Expect = 3e-20
Identities = 56/153 (36%), Positives = 90/153 (58%)
Frame = +2
Query: 86 LNDQPELLQQFGMDLLPVLMQIHGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNI 265
+ + PEL + F L VL +++ SS VRHKCL I +++YF+ AE+++ +L +
Sbjct: 1 MKEDPELAKSFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLKNHAV 60
Query: 266 SSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKIFVREGVVHAVDQLILAGKSTNIT 445
SS +A +L+ +D ++V ALQ+AEILM+KLP FS F REGV+H V LA + +T
Sbjct: 61 SSHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKH--LAESESLLT 118
Query: 446 TQASSAEKDNGSVSGTSSRSRRYRLRSGNSNPD 544
+ + +GS+ T+ S + N++ D
Sbjct: 119 SPPKACTNGSGSLGSTTPASSGTATAATNASAD 151
>gb|EAA01202.1| ebiP9798 [Anopheles gambiae str. PEST]
Length = 1692
Score = 88.2 bits (217), Expect = 6e-17
Identities = 59/170 (34%), Positives = 92/170 (53%), Gaps = 13/170 (7%)
Frame = +2
Query: 71 AREKLLNDQPELLQQFGMDLLPVLMQIHGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLL 250
AR L ++ L QF +L VL +++ SS VR+KCL + +++YF+ ++++ +L
Sbjct: 486 ARIACLKEERGLAAQFIRNLFSVLYEVYSSSAGPSVRYKCLRALLRMVYFANGDLLRDVL 545
Query: 251 SVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKIFVREGVVHAVDQL----- 415
+SS +AG++A D ++V A+Q+A+ILM KLP F F REGV+H QL
Sbjct: 546 KNQLVSSHIAGMMASNDMRIVVGAVQMADILMHKLPEVFGMHFRREGVMHQFKQLTDPSI 605
Query: 416 -ILAGKSTNIT--TQASS----AEKDNG-SVSGTSSRSRRYRLRSGNSNP 541
I A S T TQ A ++G + +GT+ SG+SNP
Sbjct: 606 PICAAPSPKSTGGTQTQGGGMVATSNSGTTATGTAHHGAHESGSSGSSNP 655
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,688,955
Number of Sequences: 1393205
Number of extensions: 10231472
Number of successful extensions: 28067
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 27254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28039
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
