Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000118A_C02 KMC000118A_c02
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_341662.1| Conserved hypothetical protein [Sulfolobus solf... 37 0.17
dbj|BAB84497.1| putative receptor-like protein kinase [Oryza sat... 32 7.3
ref|NP_604170.1| Outer membrane protein tolC [Fusobacterium nucl... 32 9.5
>ref|NP_341662.1| Conserved hypothetical protein [Sulfolobus solfataricus]
gi|7484182|pir||S75393 hypothetical protein c04027 -
Sulfolobus solfataricus gi|1707799|emb|CAA69556.1| orf
c04027 [Sulfolobus solfataricus]
gi|13813226|gb|AAK40452.1| Conserved hypothetical
protein [Sulfolobus solfataricus]
Length = 399
Score = 37.4 bits (85), Expect = 0.17
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Frame = -3
Query: 412 YDCSSSEFWCLESVHGW-YEYSIQFWTMSWNY*YWYIYIYMPSPQLYI 272
YDC S +E++ G Y+ SI +W W + Y Y+Y + LY+
Sbjct: 241 YDCCDSSILSVENIRGLVYDSSISYWDDEWVFMILYTYLYSSNSPLYL 288
>dbj|BAB84497.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)] gi|20161594|dbj|BAB90515.1| putative
receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 795
Score = 32.0 bits (71), Expect = 7.3
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = +1
Query: 307 YTNTNNSTTW-SKIGWSIHTIHVLIPDTKIHLRSSHIQDKKV 429
+T+ N +T W SK GW HT L+ + +++S +DK V
Sbjct: 106 FTDVNGTTVWESKTGWGKHTTVALLNSGNMVMKASDSEDKIV 147
>ref|NP_604170.1| Outer membrane protein tolC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586] gi|19714906|gb|AAL95469.1| Outer
membrane protein tolC [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 413
Score = 31.6 bits (70), Expect = 9.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 23 SYTYQNAYIIHNHSLRVLHTSTNNY*NKKR 112
S TY AY + H ++L S NY NKKR
Sbjct: 50 SVTYTGAYTVGEHERKILTQSERNYVNKKR 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,390,967
Number of Sequences: 1393205
Number of extensions: 12156584
Number of successful extensions: 29282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29261
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
