Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000117A_C01 KMC000117A_c01
(433 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA15734.1| hypothetical protein [Plasmodium yoelii yoelii] 32 1.4
ref|NP_510276.1| Zinc finger C3HC4 type, possibly N-myristoylate... 30 5.3
gb|AAO43212.1| cytochrome oxidase subunit III [Otiorhynchus scab... 30 6.9
pir||T49751 hypothetical protein B24B19.230 [imported] - Neurosp... 30 9.0
gb|AAO43219.1| cytochrome oxidase subunit III [Otiorhynchus scaber] 30 9.0
>gb|EAA15734.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 531
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/69 (28%), Positives = 33/69 (46%)
Frame = +1
Query: 124 YTVASSKIEFS*TYVVSFIQLTSFFFLSVWFPTISYKINMIQSTQLDRNKKAFFNWDNRL 303
Y +A I F + +F+ L F +L + + + I +++ T NKK + +L
Sbjct: 157 YLLAGGFICFFFFFCTTFVSLLFFSYLQMPYIKVPSDITILEHTYSKNNKKKKIFFLKKL 216
Query: 304 IIQFSFSDI 330
IQFSF I
Sbjct: 217 FIQFSFFTI 225
>ref|NP_510276.1| Zinc finger C3HC4 type, possibly N-myristoylated [Caenorhabditis
elegans] gi|7504124|pir||T22600 hypothetical protein
F54B11.5 - Caenorhabditis elegans
gi|3877561|emb|CAA94134.1| Hypothetical protein F54B11.5
[Caenorhabditis elegans]
Length = 201
Score = 30.4 bits (67), Expect = 5.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 113 HEPKHHPLMQNCTYDIFVCDLDFMDVNH 30
++ K HP Q+CT+D F+ D+ M+ N+
Sbjct: 4 NQSKRHPRFQSCTWDEFLADIKEMNRNY 31
>gb|AAO43212.1| cytochrome oxidase subunit III [Otiorhynchus scaber]
gi|28565686|gb|AAO43215.1| cytochrome oxidase subunit
III [Otiorhynchus scaber] gi|28565692|gb|AAO43218.1|
cytochrome oxidase subunit III [Otiorhynchus scaber]
Length = 98
Score = 30.0 bits (66), Expect = 6.9
Identities = 15/42 (35%), Positives = 21/42 (49%)
Frame = +3
Query: 105 GLML*WLHSSFIENRILLNLCGIFHTINFFFLSKCLVSYNKL 230
GL + W H S +EN + +L G+F T+ F L Y L
Sbjct: 24 GLTVTWAHHSIMENNYIQSLQGLFLTVILGFFFSLLQMYEYL 65
>pir||T49751 hypothetical protein B24B19.230 [imported] - Neurospora crassa
gi|28920699|gb|EAA30059.1| hypothetical protein (
hypothetical protein B24B19.230 [imported] - Neurospora
crassa )
Length = 105
Score = 29.6 bits (65), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 101 HHPLMQNCTYDIFVCDLDFMDVN 33
HHPL NC ++CDL +N
Sbjct: 58 HHPLPSNCWRSKYICDLGIKSIN 80
>gb|AAO43219.1| cytochrome oxidase subunit III [Otiorhynchus scaber]
Length = 98
Score = 29.6 bits (65), Expect = 9.0
Identities = 15/42 (35%), Positives = 20/42 (46%)
Frame = +3
Query: 105 GLML*WLHSSFIENRILLNLCGIFHTINFFFLSKCLVSYNKL 230
GL + W H S +EN +L G+F T+ F L Y L
Sbjct: 24 GLTVTWAHHSIMENNYTQSLQGLFLTVXLGFFFSLLQMYEYL 65
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 356,574,345
Number of Sequences: 1393205
Number of extensions: 6448161
Number of successful extensions: 12319
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12317
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
