Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000116A_C01 KMC000116A_c01
(720 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563834.1| expressed protein; protein id: At1g09020.1, sup... 75 7e-13
gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-rela... 75 7e-13
gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays] 75 9e-13
gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays] 75 9e-13
emb|CAD40779.1| OSJNBb0012E08.3 [Oryza sativa (japonica cultivar... 47 2e-04
>ref|NP_563834.1| expressed protein; protein id: At1g09020.1, supported by cDNA:
gi_16612254, supported by cDNA: gi_9965728 [Arabidopsis
thaliana] gi|16612255|gb|AAL27498.1|AF439826_1
At1g09020/F7G19_11 [Arabidopsis thaliana]
gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11
[Arabidopsis thaliana]
Length = 487
Score = 75.5 bits (184), Expect = 7e-13
Identities = 38/44 (86%), Positives = 41/44 (92%)
Frame = -1
Query: 720 TDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG 589
+D L KVMERLANPGVRRLVIVEAGSKRVEGIISLSD+F+F LG
Sbjct: 443 SDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLG 486
>gb|AAG10141.1|AF250335_1 putative activator subunit of SNF1-related protein kinase SNF4
[Arabidopsis thaliana]
Length = 382
Score = 75.5 bits (184), Expect = 7e-13
Identities = 38/44 (86%), Positives = 41/44 (92%)
Frame = -1
Query: 720 TDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG 589
+D L KVMERLANPGVRRLVIVEAGSKRVEGIISLSD+F+F LG
Sbjct: 338 SDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLG 381
>gb|AAG31752.1|AF276086_1 protein kinase AKINbetagamma-2 [Zea mays]
Length = 496
Score = 75.1 bits (183), Expect = 9e-13
Identities = 38/43 (88%), Positives = 40/43 (92%)
Frame = -1
Query: 720 TDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFL 592
+DPL KVMERLANPGVRR+ IVEAGSKRVEGIISLSDIFKF L
Sbjct: 452 SDPLLKVMERLANPGVRRVFIVEAGSKRVEGIISLSDIFKFLL 494
>gb|AAG31751.1|AF276085_1 protein kinase AKINbetagamma-1 [Zea mays]
Length = 497
Score = 75.1 bits (183), Expect = 9e-13
Identities = 38/43 (88%), Positives = 40/43 (92%)
Frame = -1
Query: 720 TDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFL 592
+DPL KVMERLANPGVRR+ IVEAGSKRVEGIISLSDIFKF L
Sbjct: 453 SDPLLKVMERLANPGVRRVFIVEAGSKRVEGIISLSDIFKFLL 495
>emb|CAD40779.1| OSJNBb0012E08.3 [Oryza sativa (japonica cultivar-group)]
Length = 451
Score = 47.4 bits (111), Expect = 2e-04
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = -1
Query: 720 TDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG 589
T +V+E+L+ PGVRR+V++E S+ V+GIISL D F F +G
Sbjct: 408 TSTFLEVLEQLSAPGVRRVVVIEPRSRFVQGIISLRDAFTFLIG 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,091,900
Number of Sequences: 1393205
Number of extensions: 11612039
Number of successful extensions: 26041
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 25380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26027
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
