Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000115A_C01 KMC000115A_c01
(657 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566372.1| expressed protein; protein id: At3g10380.1, sup... 92 8e-18
gb|AAO72704.1| unknown [Oryza sativa (japonica cultivar-group)] 87 3e-16
ref|NP_266733.1| hypothetical protein [Lactococcus lactis subsp.... 33 2.6
ref|NP_561871.1| collagen-like protein [Clostridium perfringens]... 32 5.7
>ref|NP_566372.1| expressed protein; protein id: At3g10380.1, supported by cDNA:
gi_16604636 [Arabidopsis thaliana]
gi|24418673|sp|Q93YU5|SEC8_ARATH Probable exocyst complex
component Sec8 gi|16604637|gb|AAL24111.1| unknown protein
[Arabidopsis thaliana] gi|26452109|dbj|BAC43144.1|
unknown protein [Arabidopsis thaliana]
Length = 1053
Score = 91.7 bits (226), Expect = 8e-18
Identities = 44/64 (68%), Positives = 50/64 (77%)
Frame = -2
Query: 656 VQQRLDRVRTYYELLNMPFEAXVAFITEHVHLFTAIEYANLLNVQVPGREIPPDGQDRVS 477
VQQ LDRVRTY+ELLNMPFEA +AFI EH +FT EY+NLL V VPGR+ P D Q R+
Sbjct: 989 VQQNLDRVRTYFELLNMPFEALLAFIAEHDQMFTPTEYSNLLKVNVPGRDTPSDAQSRLL 1048
Query: 476 EILS 465
EILS
Sbjct: 1049 EILS 1052
>gb|AAO72704.1| unknown [Oryza sativa (japonica cultivar-group)]
Length = 567
Score = 86.7 bits (213), Expect = 3e-16
Identities = 39/63 (61%), Positives = 52/63 (81%)
Frame = -2
Query: 656 VQQRLDRVRTYYELLNMPFEAXVAFITEHVHLFTAIEYANLLNVQVPGREIPPDGQDRVS 477
VQQR+DRVRT+YELLN+PFE+ + FI EH +LF+A EY ++L V VPGRE+P D + R+S
Sbjct: 503 VQQRIDRVRTFYELLNLPFESLLGFIAEHEYLFSAKEYLSVLKVNVPGREMPMDAERRIS 562
Query: 476 EIL 468
+IL
Sbjct: 563 QIL 565
>ref|NP_266733.1| hypothetical protein [Lactococcus lactis subsp. lactis]
gi|25401123|pir||A86697 hypothetical protein [imported]
- Lactococcus lactis subsp. lactis (strain IL1403)
gi|12723467|gb|AAK04675.1|AE006291_9 hypothetical
protein [Lactococcus lactis subsp. lactis]
Length = 310
Score = 33.5 bits (75), Expect = 2.6
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = -3
Query: 214 LVAAAFLLGFLALSVSIFGFKLCDEKLNSR*CYRPSDSHLYIFLAKDIV*LPFLLMCGLF 35
++ FL L LS++ F+L LN Y PS + +A I+ L FLL+CG F
Sbjct: 25 IIGGIFLASGLILSLASLFFEL----LNLIYLYLPSGDFATLIIAYGILPLIFLLVCGYF 80
Query: 34 LVNN 23
+ N+
Sbjct: 81 IFNS 84
>ref|NP_561871.1| collagen-like protein [Clostridium perfringens]
gi|18144615|dbj|BAB80661.1| collagen-like protein
[Clostridium perfringens str. 13]
Length = 397
Score = 32.3 bits (72), Expect = 5.7
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 23/118 (19%)
Frame = +2
Query: 200 SSSNQN*HHIINYNLQTSEGENGTAIKGKIKNHLLTCS-------IVSCNFA*NRRSASA 358
+S N N + I YN+Q G TAI I N T + + S N + ++
Sbjct: 249 TSQNVNANGIFTYNIQNPNGSTFTAITANIANGTFTINEPGRYLFMWSFNLDNTNNTTAS 308
Query: 359 SCISIFQN*GSET*LMRSPQ----------------RSQKDSRTQVNEQTTRIIFQIL 484
+ +S+F+N GS L +P+ + D T VN T ++ QI+
Sbjct: 309 AIVSLFRN-GSRVFLSGTPRVAPGEIGVVNGSIAVNANAGDVFTLVNNSTRNVLSQII 365
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,139,363
Number of Sequences: 1393205
Number of extensions: 10669227
Number of successful extensions: 20674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20672
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
