Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000114A_C01 KMC000114A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190778.1| putative protein; protein id: At3g52100.1 [Arab... 49 6e-05
ref|NP_187459.1| unknown protein; protein id: At3g08020.1 [Arabi... 42 0.006
gb|EAA16269.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.6
>ref|NP_190778.1| putative protein; protein id: At3g52100.1 [Arabidopsis thaliana]
gi|11289967|pir||T49089 hypothetical protein F4F15.210 -
Arabidopsis thaliana gi|4678939|emb|CAB41330.1| putative
protein [Arabidopsis thaliana]
Length = 763
Score = 48.5 bits (114), Expect = 6e-05
Identities = 23/36 (63%), Positives = 28/36 (76%)
Frame = -1
Query: 575 GTSKLHVTLDEGRVDICDLKKQGVRFVPHKPKRSKT 468
GTSKL VTL+ G+V +L KQGVRFVP K KR++T
Sbjct: 654 GTSKLMVTLENGKVKTVELGKQGVRFVPQKQKRTRT 689
>ref|NP_187459.1| unknown protein; protein id: At3g08020.1 [Arabidopsis thaliana]
gi|6648214|gb|AAF21212.1|AC013483_36 unknown protein
[Arabidopsis thaliana]
Length = 764
Score = 42.0 bits (97), Expect = 0.006
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = -1
Query: 593 VTEVVEGTSKLHVTLDEGRVDICDLKKQGVRFVPHKPKRSKT 468
VT+V TS L V+LD+G + +L K VRF+P K KRS++
Sbjct: 723 VTDVSGDTSTLSVSLDDGSIKTFELGKHSVRFIPQKQKRSRS 764
>gb|EAA16269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 294
Score = 33.9 bits (76), Expect = 1.6
Identities = 30/102 (29%), Positives = 40/102 (38%), Gaps = 4/102 (3%)
Frame = +2
Query: 65 NTISKLLKPAIHKINSSINHTSNT*RPSLLYSIDDLYITD----INLLYEIRYI*GEKIK 232
N I KL+ I K N ++ +Y + LY D I L Y I KI+
Sbjct: 10 NNIDKLINDKIKKENIFESNFVKLNNNFSIYKLSYLYFNDKLKRIRLDYNFHLILSNKIR 69
Query: 233 FKVKNL*PRKGLGWKQLILSKKTEMAIIEDASPKIQHDGERL 358
+K +N K L K M+I+ED H ERL
Sbjct: 70 YKKQNK--------KNLEKKNKQNMSILEDTEQNFFHIYERL 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,718,012
Number of Sequences: 1393205
Number of extensions: 8575505
Number of successful extensions: 15929
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15928
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
