Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000113A_C02 KMC000113A_c02
(874 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178634.1| cytoplasmic aconitate hydratase; protein id: At... 206 3e-52
gb|AAM97080.1| cytoplasmic aconitate hydratase [Arabidopsis thal... 206 3e-52
sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic (Citrate h... 203 2e-51
gb|AAG28426.1|AF194945_1 cytosolic aconitase [Nicotiana tabacum] 200 2e-50
gb|AAO62410.1| aconitase [Lycopersicon pennellii] 198 1e-49
>ref|NP_178634.1| cytoplasmic aconitate hydratase; protein id: At2g05710.1 [Arabidopsis
thaliana] gi|25291948|pir||B84471 cytoplasmic aconitate
hydratase [imported] - Arabidopsis thaliana
gi|4586021|gb|AAD25640.1| cytoplasmic aconitate hydratase
[Arabidopsis thaliana]
Length = 898
Score = 206 bits (525), Expect = 3e-52
Identities = 102/112 (91%), Positives = 105/112 (93%), Gaps = 3/112 (2%)
Frame = -1
Query: 874 RDWAXKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDL 695
RDWA KGPML GVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTI L
Sbjct: 785 RDWAAKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIHL 844
Query: 694 P---SEIRPGQDVTVTTDNGKSFTCKLRFDTEVELAYFNHGGILPYVIRSLA 548
P SEIRPGQDVTVTTDNGKSFTC +RFDTEVELAYFNHGGILPYVIR+L+
Sbjct: 845 PTDISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLS 896
>gb|AAM97080.1| cytoplasmic aconitate hydratase [Arabidopsis thaliana]
Length = 990
Score = 206 bits (525), Expect = 3e-52
Identities = 102/112 (91%), Positives = 105/112 (93%), Gaps = 3/112 (2%)
Frame = -1
Query: 874 RDWAXKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDL 695
RDWA KGPML GVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTI L
Sbjct: 877 RDWAAKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIHL 936
Query: 694 P---SEIRPGQDVTVTTDNGKSFTCKLRFDTEVELAYFNHGGILPYVIRSLA 548
P SEIRPGQDVTVTTDNGKSFTC +RFDTEVELAYFNHGGILPYVIR+L+
Sbjct: 937 PTDISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLS 988
>sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase)
gi|7437043|pir||T10101 aconitate hydratase (EC 4.2.1.3) -
cucurbit gi|868003|dbj|BAA06108.1| aconitase [Cucurbita
cv. Kurokawa Amakuri]
Length = 898
Score = 203 bits (517), Expect = 2e-51
Identities = 100/111 (90%), Positives = 106/111 (95%), Gaps = 3/111 (2%)
Frame = -1
Query: 874 RDWAXKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDL 695
RDWA KGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDAD+LGLTGHERYTIDL
Sbjct: 785 RDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADSLGLTGHERYTIDL 844
Query: 694 P---SEIRPGQDVTVTTDNGKSFTCKLRFDTEVELAYFNHGGILPYVIRSL 551
P S+IRPGQDVTVTTD+GKSFTC +RFDTEVELAYFN+GGILPYVIR+L
Sbjct: 845 PDDISKIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFNNGGILPYVIRNL 895
>gb|AAG28426.1|AF194945_1 cytosolic aconitase [Nicotiana tabacum]
Length = 898
Score = 200 bits (509), Expect = 2e-50
Identities = 98/111 (88%), Positives = 102/111 (91%), Gaps = 3/111 (2%)
Frame = -1
Query: 874 RDWAXKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDL 695
RDWA KGPMLLGVKAVIAKSFERIHRSNLVGMGI+PLCFK+GEDA+TLGLTGHERYTIDL
Sbjct: 785 RDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIVPLCFKAGEDAETLGLTGHERYTIDL 844
Query: 694 P---SEIRPGQDVTVTTDNGKSFTCKLRFDTEVELAYFNHGGILPYVIRSL 551
P SEI PGQDVTV TD GKSFTC +RFDTEVELAYFNHGGILPYVIR L
Sbjct: 845 PEKISEIHPGQDVTVRTDTGKSFTCIVRFDTEVELAYFNHGGILPYVIRQL 895
>gb|AAO62410.1| aconitase [Lycopersicon pennellii]
Length = 898
Score = 198 bits (503), Expect = 1e-49
Identities = 98/111 (88%), Positives = 101/111 (90%), Gaps = 3/111 (2%)
Frame = -1
Query: 874 RDWAXKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDL 695
RDWA KGPMLLGVKAVIAKSFERIHRSNLVGMGI+PLCFK+GEDADTLGLTG ERYTIDL
Sbjct: 785 RDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIVPLCFKAGEDADTLGLTGQERYTIDL 844
Query: 694 P---SEIRPGQDVTVTTDNGKSFTCKLRFDTEVELAYFNHGGILPYVIRSL 551
P SEIRPGQDVTV TD GKSFTC +RFDTEVELAYFNHGGIL YVIR L
Sbjct: 845 PENISEIRPGQDVTVQTDTGKSFTCVVRFDTEVELAYFNHGGILQYVIRQL 895
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 743,368,861
Number of Sequences: 1393205
Number of extensions: 16116129
Number of successful extensions: 30327
Number of sequences better than 10.0: 228
Number of HSP's better than 10.0 without gapping: 29310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30219
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46824663816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
