Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000111A_C01 KMC000111A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11568.1| contains similarity to kinesin heavy chain~gene_... 189 2e-47
ref|NP_201349.2| kinesin-related protein; protein id: At5g65460.... 189 2e-47
ref|NP_196609.1| kinesin-related protein; protein id: At5g10470.... 171 7e-42
gb|AAG17564.1|AF239221_1 cytochrome c oxidase subunit 1 [Stemoni... 35 0.57
gb|EAA30692.1| hypothetical protein [Neurospora crassa] 35 0.57
>dbj|BAB11568.1| contains similarity to kinesin heavy chain~gene_id:MNA5.20
[Arabidopsis thaliana]
Length = 1264
Score = 189 bits (479), Expect = 2e-47
Identities = 95/109 (87%), Positives = 102/109 (93%)
Frame = -1
Query: 537 SSPFIIKCGANSSSELVIKADARVQEPKGGEIVRVAPRPSILENMSLEEMKQVFAELPEA 358
S+PFIIKCGANS+SELVIKADAR+QEPKGGEIVRV PRPS+LENMSLEEMKQVF +LPEA
Sbjct: 1155 SAPFIIKCGANSNSELVIKADARIQEPKGGEIVRVVPRPSVLENMSLEEMKQVFGQLPEA 1214
Query: 357 LSLLALARTADGTRARYSRLYRTLATKVPSLRDLVSELEKGGALKDVRT 211
LS LALARTADGTRARYSRLYRTLA KVPSLRDLV ELEKGG LKD ++
Sbjct: 1215 LSSLALARTADGTRARYSRLYRTLAMKVPSLRDLVGELEKGGVLKDTKS 1263
>ref|NP_201349.2| kinesin-related protein; protein id: At5g65460.1 [Arabidopsis
thaliana]
Length = 1281
Score = 189 bits (479), Expect = 2e-47
Identities = 95/109 (87%), Positives = 102/109 (93%)
Frame = -1
Query: 537 SSPFIIKCGANSSSELVIKADARVQEPKGGEIVRVAPRPSILENMSLEEMKQVFAELPEA 358
S+PFIIKCGANS+SELVIKADAR+QEPKGGEIVRV PRPS+LENMSLEEMKQVF +LPEA
Sbjct: 1172 SAPFIIKCGANSNSELVIKADARIQEPKGGEIVRVVPRPSVLENMSLEEMKQVFGQLPEA 1231
Query: 357 LSLLALARTADGTRARYSRLYRTLATKVPSLRDLVSELEKGGALKDVRT 211
LS LALARTADGTRARYSRLYRTLA KVPSLRDLV ELEKGG LKD ++
Sbjct: 1232 LSSLALARTADGTRARYSRLYRTLAMKVPSLRDLVGELEKGGVLKDTKS 1280
>ref|NP_196609.1| kinesin-related protein; protein id: At5g10470.1 [Arabidopsis
thaliana] gi|11357359|pir||T49992 hypothetical protein
F12B17.180 - Arabidopsis thaliana
gi|7671456|emb|CAB89396.1| putative protein [Arabidopsis
thaliana] gi|21428315|gb|AAM49809.1| geminivirus
replication protein-interacting protein [Arabidopsis
thaliana]
Length = 1273
Score = 171 bits (432), Expect = 7e-42
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = -1
Query: 537 SSPFIIKCGANSSSELVIKADARVQEPKGGEIVRVAPRPSILENMSLEEMKQVFAELPEA 358
S+PFIIKCG N++SELVIKADARVQEPKGGEIVRV PRPS+L NMSLEEMKQ+F +LPEA
Sbjct: 1175 SAPFIIKCGGNNNSELVIKADARVQEPKGGEIVRVVPRPSVLVNMSLEEMKQMFVQLPEA 1234
Query: 357 LSLLALARTADGTRARYSRLYRTLATKVPSLRDLVSELE 241
LSLLALARTADGTRARYSRLY+TLA KVPSL+DLVSELE
Sbjct: 1235 LSLLALARTADGTRARYSRLYKTLAMKVPSLKDLVSELE 1273
>gb|AAG17564.1|AF239221_1 cytochrome c oxidase subunit 1 [Stemonitis flavogenita]
gi|10443789|gb|AAG17565.1|AF239222_1 cytochrome c
oxidase subunit 1 [Stemonitis flavogenita]
Length = 601
Score = 35.0 bits (79), Expect = 0.57
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Frame = -2
Query: 170 MLSSLGVGLSGITFSVLFA--------LLLGGKVSLYHVIVTMRARFVTLIFMYLFPAVL 15
+L S+G GL G++ SV+ LLL LY+ IVT A + +IF ++ PA++
Sbjct: 43 LLFSIGAGLLGLSLSVIMRMELAGCGDLLLNSNYQLYNTIVTAHA--LIMIFFFVMPALI 100
>gb|EAA30692.1| hypothetical protein [Neurospora crassa]
Length = 1062
Score = 35.0 bits (79), Expect = 0.57
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = -1
Query: 528 FIIKCGANSSSELVIKADARVQEPKGGEIVRVAPRPSILENMS-----LEEMKQVFAELP 364
FI+ G+ S LV+ + V GG+ V+ PRP+ E ++ LE++K+ +
Sbjct: 188 FILSLGSCESC-LVVDDELNVLPISGGKAVKALPRPTDDEEVNPAKKELEKIKESLEDTQ 246
Query: 363 EALSLLALARTADGTRA 313
SL+ LART D +A
Sbjct: 247 PIGSLVQLARTTDQAKA 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,422,559
Number of Sequences: 1393205
Number of extensions: 9634954
Number of successful extensions: 27967
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 27159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27961
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
