Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000110A_C01 KMC000110A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG18376.1|AF283894_1 lipoxygenase [Zantedeschia aethiopica] 179 2e-44
ref|NP_176923.1| putative lipoxygenase; protein id: At1g67560.1,... 174 7e-43
pir||T07409 lipoxygenase (EC 1.13.11.12) loxD - tomato gi|165414... 156 3e-37
pir||T07065 probable lipoxygenase (EC 1.13.11.12) (clone H3) - p... 155 3e-37
emb|CAC43237.1| lipoxygenase [Sesbania rostrata] 149 2e-35
>gb|AAG18376.1|AF283894_1 lipoxygenase [Zantedeschia aethiopica]
Length = 816
Score = 179 bits (455), Expect = 2e-44
Identities = 90/134 (67%), Positives = 108/134 (80%), Gaps = 4/134 (2%)
Frame = -3
Query: 647 RPTLMRRLIPPENDHDYEKFIENPELVFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGE 468
RPTLM++LIP E+D +Y F+ENP+ FLSSLPTQL+AT+VMAVQDTLSTHSPDEEYLG+
Sbjct: 683 RPTLMKKLIPEEDDPEYRNFLENPQQAFLSSLPTQLRATQVMAVQDTLSTHSPDEEYLGQ 742
Query: 467 VNPLH----HDHEILKLFSKFSARLEEIEEIIKARNKDPRLKNRSGAGVAPYELLLPTSG 300
+ H D ++ F KFSARLE+IEEII+ RN + LKNR+GAG+ PYELLL +SG
Sbjct: 743 LPDSHSNWISDRRMITSFEKFSARLEDIEEIIRKRNGNLHLKNRTGAGIPPYELLLRSSG 802
Query: 299 PGVTGRGIPNSISI 258
PG TGRGIPNSISI
Sbjct: 803 PGATGRGIPNSISI 816
>ref|NP_176923.1| putative lipoxygenase; protein id: At1g67560.1, supported by cDNA:
gi_19698812 [Arabidopsis thaliana]
gi|25285676|pir||B96699 probable lipoxygenase F12B7.11
[imported] - Arabidopsis thaliana
gi|12324686|gb|AAG52309.1|AC011020_16 putative
lipoxygenase [Arabidopsis thaliana]
gi|19698813|gb|AAL91142.1| putative lipoxygenase
[Arabidopsis thaliana]
Length = 917
Score = 174 bits (442), Expect = 7e-43
Identities = 89/134 (66%), Positives = 105/134 (77%), Gaps = 4/134 (2%)
Frame = -3
Query: 647 RPTLMRRLIPPENDHDYEKFIENPELVFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGE 468
RPTL+R+LIP E D DYE F+ NP+ FL SLPTQLQATKVMAVQ+TLSTHSPDEEYL E
Sbjct: 784 RPTLLRKLIPQETDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIE 843
Query: 467 VNPLH----HDHEILKLFSKFSARLEEIEEIIKARNKDPRLKNRSGAGVAPYELLLPTSG 300
+ + D +++K F+KFS L +IE+ I RNKD +LKNR+GAG+ PYELLLPTS
Sbjct: 844 LREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSP 903
Query: 299 PGVTGRGIPNSISI 258
GVTGRGIPNSISI
Sbjct: 904 HGVTGRGIPNSISI 917
>pir||T07409 lipoxygenase (EC 1.13.11.12) loxD - tomato gi|1654140|gb|AAB65767.1|
lipoxygenase
Length = 908
Score = 156 bits (394), Expect = 3e-37
Identities = 82/133 (61%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
Frame = -3
Query: 647 RPTLMRRLIPPENDHDYEKFIENPELVFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGE 468
RP LMRRLIP END +Y F+ +P+ F S+LP+ LQATK MAV DTLSTHSPDEEY+GE
Sbjct: 776 RPPLMRRLIPDENDPEYAVFLADPQKYFFSALPSLLQATKFMAVVDTLSTHSPDEEYIGE 835
Query: 467 ---VNPLHHDHEILKLFSKFSARLEEIEEIIKARNKDPRLKNRSGAGVAPYELLLPTSGP 297
+ D EI++ F KFSA + IE+ I RN D LKNR GAGV PYELL P+SGP
Sbjct: 836 RQQPSTWTGDAEIVEAFYKFSAEIGRIEKEIDERNADTNLKNRCGAGVLPYELLAPSSGP 895
Query: 296 GVTGRGIPNSISI 258
GVT RG+PNS+SI
Sbjct: 896 GVTCRGVPNSVSI 908
>pir||T07065 probable lipoxygenase (EC 1.13.11.12) (clone H3) - potato
gi|1495804|emb|CAA65269.1| 13-lipoxygenase [Solanum
tuberosum]
Length = 914
Score = 155 bits (393), Expect = 3e-37
Identities = 82/133 (61%), Positives = 98/133 (73%), Gaps = 3/133 (2%)
Frame = -3
Query: 647 RPTLMRRLIPPENDHDYEKFIENPELVFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGE 468
RP LMRRLIP END +Y F+ +P+ F S+LP+ LQATK MAV DTLSTHSPDEEYLGE
Sbjct: 782 RPPLMRRLIPDENDPEYAVFLADPQKYFFSALPSLLQATKFMAVVDTLSTHSPDEEYLGE 841
Query: 467 ---VNPLHHDHEILKLFSKFSARLEEIEEIIKARNKDPRLKNRSGAGVAPYELLLPTSGP 297
+ D EI++ F KFSA + IE+ I RN + +LKNR GAGV PYELL P+SGP
Sbjct: 842 RHQPSTWTGDAEIVEAFYKFSAEIGRIEKEIDERNANTKLKNRCGAGVLPYELLAPSSGP 901
Query: 296 GVTGRGIPNSISI 258
GVT RG+PNS+SI
Sbjct: 902 GVTCRGVPNSVSI 914
>emb|CAC43237.1| lipoxygenase [Sesbania rostrata]
Length = 922
Score = 149 bits (377), Expect = 2e-35
Identities = 76/132 (57%), Positives = 99/132 (74%), Gaps = 3/132 (2%)
Frame = -3
Query: 647 RPTLMRRLIPPENDHDYEKFIENPELVFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGE 468
RP LMRRLIP E D ++ F+ +P+ FL++LP+ LQA+K MAV DTLSTHSPDEEYLGE
Sbjct: 790 RPPLMRRLIPEEGDPEFASFLADPQKYFLNALPSVLQASKYMAVVDTLSTHSPDEEYLGE 849
Query: 467 ---VNPLHHDHEILKLFSKFSARLEEIEEIIKARNKDPRLKNRSGAGVAPYELLLPTSGP 297
+ D EI++ F +FSA++ +IE++I +RN D L+NR GAGV PYELL P+S P
Sbjct: 850 RQQPSIWSGDPEIVEAFYEFSAQIRQIEKVIDSRNSDRTLRNRCGAGVLPYELLAPSSEP 909
Query: 296 GVTGRGIPNSIS 261
GVT RG+PNS+S
Sbjct: 910 GVTCRGVPNSVS 921
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,774,034
Number of Sequences: 1393205
Number of extensions: 11112759
Number of successful extensions: 27155
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 26213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26994
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
